HL_9SS1_024

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9SS1|1|D1|A|1092, 9SS1|1|D1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_024 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2958

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9SS1|1|D1|G|1089
9SS1|1|D1|U|1090
9SS1|1|D1|U|1091
9SS1|1|D1|A|1092
9SS1|1|D1|A|1093
9SS1|1|D1|G|1094
9SS1|1|D1|U|1095
9SS1|1|D1|C|1096

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AF

Small ribosomal subunit protein uS7

Chain AT

Small ribosomal subunit protein bS21