HL_9SS2_030

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9SS2|1|D1|U|1451, 9SS2|1|D1|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS2_030 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2939

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9SS2|1|D1|C|1449
9SS2|1|D1|U|1450
9SS2|1|D1|U|1451
9SS2|1|D1|C|1452
9SS2|1|D1|G|1453
9SS2|1|D1|G|1454

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains