HL_9SS4_007

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

9SS4|1|D2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_007 not in the Motif Atlas

Geometric match to HL_8B0X_039

Geometric discrepancy: 0.1999

The information below is about HL_8B0X_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63151.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

2

Unit IDs

9SS4|1|D2|C|225
9SS4|1|D2|A|226
9SS4|1|D2|A|227
9SS4|1|D2|C|228
9SS4|1|D2|C|229
9SS4|1|D2|G|230

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BO

Large ribosomal subunit protein uL15