HL_9SS4_011

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9SS4|1|D2|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_011 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.307

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS4|1|D2|A|382
9SS4|1|D2|C|383
9SS4|1|D2|A|384
9SS4|1|D2|C|385
9SS4|1|D2|G|386
9SS4|1|D2|U|387
9SS4|1|D2|G|388
9SS4|1|D2|G|389
9SS4|1|D2|U|390
9SS4|1|D2|A|391
9SS4|1|D2|U|392

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28