HL_9SS4_021

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

9SS4|1|D2|C|747, 9SS4|1|D2|A|751, 9SS4|1|D2|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_021 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1501

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9SS4|1|D2|U|744
9SS4|1|D2|G|745
9SS4|1|D2|U|746
9SS4|1|D2|C|747
9SS4|1|D2|G|748
9SS4|1|D2|A|749
9SS4|1|D2|A|750
9SS4|1|D2|A|751
9SS4|1|D2|A|752
9SS4|1|D2|A|753

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain B7

Large ribosomal subunit protein bL34

Chain BC

50S ribosomal protein L3

Chain BV

Large ribosomal subunit protein uL22