HL_9SS4_026

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_026 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1539

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9SS4|1|D2|G|978
9SS4|1|D2|A|979
9SS4|1|D2|A|980
9SS4|1|D2|A|981
9SS4|1|D2|C|982
9SS4|1|D2|A|983
9SS4|1|D2|A|984
9SS4|1|D2|C|985

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BT

Large ribosomal subunit protein bL20

Chain BU

Large ribosomal subunit protein bL21