HL_9SS4_049

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9SS4|1|D2|A|2211, 9SS4|1|D2|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_049 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.1343

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS4|1|D2|G|2209
9SS4|1|D2|U|2210
9SS4|1|D2|A|2211
9SS4|1|D2|A|2212
9SS4|1|D2|U|2213
9SS4|1|D2|C|2214
9SS4|1|D2|C|2215

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2