HL_9SS4_065

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9SS4|1|D2|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_065 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1446

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SS4|1|D2|G|2819
9SS4|1|D2|A|2820
9SS4|1|D2|A|2821
9SS4|1|D2|G|2822
9SS4|1|D2|A|2823
9SS4|1|D2|C|2824
9SS4|1|D2|G|2825
9SS4|1|D2|A|2826
9SS4|1|D2|C|2827

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BQ

Large ribosomal subunit protein bL17