HL_9SS5_005

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_005 not in the Motif Atlas

Homologous match to HL_8B0X_037

Geometric discrepancy: 0.1186

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS5|1|D2|U|158
9SS5|1|D2|G|159
9SS5|1|D2|A|160
9SS5|1|D2|A|161
9SS5|1|D2|U|162
9SS5|1|D2|C|163
9SS5|1|D2|C|164
9SS5|1|D2|A|165
9SS5|1|D2|U|166
9SS5|1|D2|A|167
9SS5|1|D2|G|168

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28