HL_9SS5_010

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9SS5|1|D2|G|329, 9SS5|1|D2|A|330, 9SS5|1|D2|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_010 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3692

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9SS5|1|D2|G|327
9SS5|1|D2|U|328
9SS5|1|D2|G|329
9SS5|1|D2|A|330
9SS5|1|D2|C|331
9SS5|1|D2|A|332
9SS5|1|D2|G|333
9SS5|1|D2|C|334
9SS5|1|D2|C|335

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BX

Large ribosomal subunit protein uL24