HL_9SS5_012

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9SS5|1|D2|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1006

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SS5|1|D2|G|410
9SS5|1|D2|G|411
9SS5|1|D2|A|412
9SS5|1|D2|C|413
9SS5|1|D2|C|414
9SS5|1|D2|A|415
9SS5|1|D2|U|416
9SS5|1|D2|C|417

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains