HL_9SS5_035

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9SS5|1|D2|G|1452, 9SS5|1|D2|A|1453, 9SS5|1|D2|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|C|1451
9SS5|1|D2|G|1452
9SS5|1|D2|A|1453
9SS5|1|D2|C|1454
9SS5|1|D2|G|1455
9SS5|1|D2|G|1456
9SS5|1|D2|U|1457
9SS5|1|D2|U|1458
9SS5|1|D2|G|1459

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17