HL_9SS5_044

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9SS5|1|D2|A|1780, 9SS5|1|D2|U|1781, 9SS5|1|D2|U|1782, 9SS5|1|D2|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_044 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.0924

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9SS5|1|D2|U|1777
9SS5|1|D2|U|1778
9SS5|1|D2|U|1779
9SS5|1|D2|A|1780
9SS5|1|D2|U|1781
9SS5|1|D2|U|1782
9SS5|1|D2|A|1783
9SS5|1|D2|A|1784
9SS5|1|D2|A|1785
9SS5|1|D2|A|1786
9SS5|1|D2|A|1787

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2