HL_9SS5_047

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9SS5|1|D2|A|1913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_047 not in the Motif Atlas

Geometric match to HL_8OI5_044

Geometric discrepancy: 0.2657

The information below is about HL_8OI5_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS5|1|D2|G|1910
9SS5|1|D2|U|1911
9SS5|1|D2|A|1912
9SS5|1|D2|A|1913
9SS5|1|D2|C|1914
9SS5|1|D2|U|1915
9SS5|1|D2|A|1916
9SS5|1|D2|U|1917
9SS5|1|D2|A|1918
9SS5|1|D2|A|1919
9SS5|1|D2|C|1920

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains