HL_9SS5_050

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

9SS5|1|D2|C|2145, 9SS5|1|D2|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_050 not in the Motif Atlas

Geometric match to HL_6WBR_004

Geometric discrepancy: 0.3906

The information below is about HL_6WBR_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9SS5|1|D2|A|2142
9SS5|1|D2|C|2143
9SS5|1|D2|G|2144
9SS5|1|D2|C|2145
9SS5|1|D2|C|2146
9SS5|1|D2|A|2147
9SS5|1|D2|G|2148
9SS5|1|D2|U|2149

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains