HL_9SS6_025

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9SS6|1|D1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2166

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9SS6|1|D1|G|1089
9SS6|1|D1|U|1090
9SS6|1|D1|U|1091
9SS6|1|D1|A|1092
9SS6|1|D1|A|1093
9SS6|1|D1|G|1094
9SS6|1|D1|U|1095
9SS6|1|D1|C|1096

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AF

Small ribosomal subunit protein uS7

Chain AT

Small ribosomal subunit protein bS21