HL_9SS6_049

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9SS6|1|D2|A|613, 9SS6|1|D2|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_049 not in the Motif Atlas

Geometric match to HL_9E6Q_019

Geometric discrepancy: 0.2761

The information below is about HL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS6|1|D2|C|611
9SS6|1|D2|G|612
9SS6|1|D2|A|613
9SS6|1|D2|A|614
9SS6|1|D2|U|615
9SS6|1|D2|A|616
9SS6|1|D2|G|617

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BG

Small ribosomal subunit protein bS20