HL_9SS6_056

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_056 not in the Motif Atlas

Homologous match to HL_8B0X_056

Geometric discrepancy: 0.4631

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9SS6|1|D2|C|885
9SS6|1|D2|A|886
9SS6|1|D2|U|887
9SS6|1|D2|C|888
9SS6|1|D2|C|889
9SS6|1|D2|C|890
9SS6|1|D2|G|891

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain AL

Small ribosomal subunit protein uS13