HL_9SS6_069

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9SS6|1|D2|A|1535, 9SS6|1|D2|C|1536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_069 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.3127

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9SS6|1|D2|C|1533
9SS6|1|D2|U|1534
9SS6|1|D2|A|1535
9SS6|1|D2|C|1536
9SS6|1|D2|G|1537
9SS6|1|D2|G|1538

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains