HL_9SS6_071

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9SS6|1|D2|A|1614, 9SS6|1|D2|A|1616, 9SS6|1|D2|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_071 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1084

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9SS6|1|D2|C|1612
9SS6|1|D2|G|1613
9SS6|1|D2|A|1614
9SS6|1|D2|C|1615
9SS6|1|D2|A|1616
9SS6|1|D2|C|1617
9SS6|1|D2|A|1618
9SS6|1|D2|G|1619

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BV

Large ribosomal subunit protein uL22