HL_9SS6_073

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9SS6|1|D2|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_073 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.119

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9SS6|1|D2|C|1691
9SS6|1|D2|U|1692
9SS6|1|D2|U|1693
9SS6|1|D2|C|1694
9SS6|1|D2|G|1695
9SS6|1|D2|G|1696

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain D1

Small subunit ribosomal RNA; SSU rRNA