HL_9SS6_079
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9SS6|1|D2|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS6_079 not in the Motif Atlas
- Geometric match to HL_8OI5_044
- Geometric discrepancy: 0.1248
- The information below is about HL_8OI5_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9SS6|1|D2|G|1910
9SS6|1|D2|U|1911
9SS6|1|D2|A|1912
9SS6|1|D2|A|1913
9SS6|1|D2|C|1914
9SS6|1|D2|U|1915
9SS6|1|D2|A|1916
9SS6|1|D2|U|1917
9SS6|1|D2|A|1918
9SS6|1|D2|A|1919
9SS6|1|D2|C|1920
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain D1
- Small subunit ribosomal RNA; SSU rRNA
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