HL_9SS6_081

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9SS6|1|D2|A|2030, 9SS6|1|D2|A|2031, 9SS6|1|D2|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_081 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2203

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9SS6|1|D2|G|2027
9SS6|1|D2|U|2028
9SS6|1|D2|G|2029
9SS6|1|D2|A|2030
9SS6|1|D2|A|2031
9SS6|1|D2|G|2032
9SS6|1|D2|A|2033
9SS6|1|D2|U|2034
9SS6|1|D2|G|2035
9SS6|1|D2|C|2036

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3

Chain BU

Large ribosomal subunit protein bL21