HL_9SS6_085

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9SS6|1|D2|A|2268, 9SS6|1|D2|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_085 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1091

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9SS6|1|D2|C|2264
9SS6|1|D2|U|2265
9SS6|1|D2|A|2266
9SS6|1|D2|A|2267
9SS6|1|D2|A|2268
9SS6|1|D2|G|2269
9SS6|1|D2|A|2270
9SS6|1|D2|G|2271
9SS6|1|D2|U|2272
9SS6|1|D2|A|2273
9SS6|1|D2|A|2274
9SS6|1|D2|C|2275
9SS6|1|D2|G|2276

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain BP

50S ribosomal protein L16