HL_9SS6_092

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9SS6|1|D2|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_092 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1582

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9SS6|1|D2|U|2528
9SS6|1|D2|G|2529
9SS6|1|D2|A|2530
9SS6|1|D2|A|2531
9SS6|1|D2|G|2532
9SS6|1|D2|U|2533
9SS6|1|D2|A|2534
9SS6|1|D2|G|2535

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BF

Large ribosomal subunit protein uL6