HL_9SS6_097

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9SS6|1|D2|G|2751, 9SS6|1|D2|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_097 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2557

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9SS6|1|D2|C|2745
9SS6|1|D2|U|2746
9SS6|1|D2|G|2747
9SS6|1|D2|A|2748
9SS6|1|D2|A|2749
9SS6|1|D2|A|2750
9SS6|1|D2|G|2751
9SS6|1|D2|C|2752
9SS6|1|D2|A|2753
9SS6|1|D2|U|2754
9SS6|1|D2|C|2755
9SS6|1|D2|U|2756
9SS6|1|D2|A|2757
9SS6|1|D2|A|2758
9SS6|1|D2|G|2759

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BF

Large ribosomal subunit protein uL6

Chain BM

Large ribosomal subunit protein uL13