HL_9SUM_001
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GCUUCGAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SUM_001 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.1287
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 45
Unit IDs
9SUM|1|1|G|31
9SUM|1|1|C|32
9SUM|1|1|U|33
9SUM|1|1|U|34
9SUM|1|1|C|35
9SUM|1|1|G|36
9SUM|1|1|A|37
9SUM|1|1|A|38
9SUM|1|1|C|39
Current chains
- Chain 1
- P-site tRNA
Nearby chains
- Chain 2
- RNA (5'-R(P*CP*GP*A)-3')
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain ZH
- Small ribosomal subunit protein uS9
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