RNA 3D Hub //

9SUM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9SUM_0011/1/31:39tRNA anticodon loop
homologous
HL_9MTS_102
HL_81376.5
HL_9SUM_0021/A/36:43No text annotation
HL_02262.2
HL_9SUM_0031/A/67:72No text annotation
HL_23875.2
HL_9SUM_0041/A/88:94No text annotation
HL_76371.5
HL_9SUM_0051/A/125:130No text annotation
HL_61337.7
HL_9SUM_0061/A/186:193No text annotation
HL_13999.6
HL_9SUM_0071/A/200:204No text annotation
HL_75660.11
HL_9SUM_0081/A/208:216No text annotation
HL_27670.7
HL_9SUM_0091/A/268:277No text annotation
HL_63894.5
HL_9SUM_0101/A/293:302No text annotation
HL_00911.5
HL_9SUM_0111/A/347:352No text annotation
HL_34789.7
HL_9SUM_0121/A/372:377No text annotation
HL_34789.7
HL_9SUM_0131/A/434:439No text annotation
HL_61337.7
HL_9SUM_0141/A/547:552No text annotation
HL_89167.5
HL_9SUM_0151/A/586:595No text annotation
HL_33597.8
HL_9SUM_0161/A/632:640No text annotation
HL_18470.6
HL_9SUM_0171/A/653:658No text annotation
HL_34789.7
HL_9SUM_0181/A/674:681No text annotation
HL_28253.2
HL_9SUM_0191/A/706:711No text annotation
HL_44506.5
HL_9SUM_0201/A/787:792No text annotation
HL_34789.7
HL_9SUM_0211/A/819:828No text annotation
HL_50204.4
HL_9SUM_0221/A/853:861No text annotation
HL_28253.2
HL_9SUM_0231/A/901:906No text annotation
HL_27530.4
HL_9SUM_0241/A/1023:1030No text annotation
HL_63894.5
HL_9SUM_0251/A/1073:1079No text annotation
HL_34789.7
HL_9SUM_0261/A/1095:1102No text annotation
HL_47171.4
HL_9SUM_0271/A/1295:1300No text annotation
HL_40612.2
HL_9SUM_0281/A/1346:1351No text annotation
HL_34789.7
HL_9SUM_0291/A/1405:1413T-loop with 2 stacked bulged bases
HL_33597.8
HL_9SUM_0301/A/1449:1455No text annotation
HL_49081.3
HL_9SUM_0311/A/1486:1493No text annotation
HL_67772.4
HL_9SUM_0321/A/1541:1550No text annotation
HL_77449.4
HL_9SUM_0331/A/1574:1579No text annotation
HL_34789.7
HL_9SUM_0341/A/1620:1628No text annotation
HL_22758.4
HL_9SUM_0351/A/1659:1665No text annotation
HL_67772.4
HL_9SUM_0361/A/1735:1739No text annotation
HL_90436.6
HL_9SUM_0371/A/1786:1793No text annotation
HL_28592.5
HL_9SUM_0381/A/1804:1810No text annotation
HL_34789.7
HL_9SUM_0391/A/1865:1870No text annotation
HL_61337.7
HL_9SUM_0401/A/2025:2029No text annotation
homologous
HL_9PN5_043
HL_17051.1
HL_9SUM_0411/A/2050:2060No text annotation
HL_87681.4
HL_9SUM_0421/A/2079:2085No text annotation
HL_34789.7
HL_9SUM_0431/A/2135:2140No text annotation
HL_34789.7
HL_9SUM_0441/A/2168:2178No text annotation
HL_82185.4
HL_9SUM_0451/A/2207:2215No text annotation
HL_77449.4
HL_9SUM_0461/A/2284:2293No text annotation
HL_78372.4
HL_9SUM_0471/A/2516:2524No text annotation
HL_11974.5
HL_9SUM_0481/A/2533:2545No text annotation
HL_02042.4
HL_9SUM_0491/A/2573:2581No text annotation
HL_02452.4
HL_9SUM_0501/A/2593:2600No text annotation
HL_52651.5
HL_9SUM_0511/A/2624:2632No text annotation
HL_15296.4
HL_9SUM_0521/A/2644:2649No text annotation
HL_34789.7
HL_9SUM_0531/A/2676:2684No text annotation
HL_52651.5
HL_9SUM_0541/A/2740:2748No text annotation
HL_52011.4
HL_9SUM_0551/A/2797:2804No text annotation
HL_02262.2
HL_9SUM_0561/A/2820:2826No text annotation
HL_02262.2
HL_9SUM_0571/A/2863:2868No text annotation
HL_34789.7
HL_9SUM_0581/A/2926:2931No text annotation
HL_34789.7
HL_9SUM_0591/A/2969:2974No text annotation
HL_12125.5
HL_9SUM_0601/A/3011:3025No text annotation
HL_53269.5
HL_9SUM_0611/A/3092:3097UNCG
HL_61337.7
HL_9SUM_0621/A/3132:3139No text annotation
HL_31089.4
HL_9SUM_0631/A/3191:3199No text annotation
HL_37889.4
HL_9SUM_0641/A/3238:3241No text annotation
HL_90436.6
HL_9SUM_0651/B/33:46No text annotation
HL_01182.3
HL_9SUM_0661/B/37:42No text annotation
HL_59381.5
HL_9SUM_0671/B/89:94GNRA
HL_34789.7
HL_9SUM_0681/C/47:56No text annotation
HL_17803.4
HL_9SUM_0691/C/69:85No text annotation
HL_9SUM_0701/C/104:110No text annotation
HL_23875.2
HL_9SUM_0711/C/120:125No text annotation
HL_18050.2
HL_9SUM_0721/CA/7:17No text annotation
HL_73535.4
HL_9SUM_0731/CA/70:80No text annotation
HL_9SUM_0741/CA/152:158No text annotation
HL_34789.7
HL_9SUM_0761/CA/232:239No text annotation
HL_67772.4
HL_9SUM_0781/CA/319:327No text annotation
HL_87268.5
HL_9SUM_0791/CA/357:362No text annotation
HL_34789.7
HL_9SUM_0801/CA/382:393No text annotation
HL_86432.4
HL_9SUM_0811/CA/403:408No text annotation
HL_61337.7
HL_9SUM_0821/CA/439:445No text annotation
HL_25795.2
HL_9SUM_0831/CA/509:521No text annotation
HL_68749.4
HL_9SUM_0841/CA/558:563No text annotation
HL_34789.7
HL_9SUM_0851/CA/735:743No text annotation
HL_11974.5
HL_9SUM_0861/CA/748:753No text annotation
HL_27510.2
HL_9SUM_0871/CA/870:879No text annotation
HL_38491.5
HL_9SUM_0881/CA/907:912No text annotation
HL_34789.7
HL_9SUM_0891/CA/967:977No text annotation
HL_38491.5
HL_9SUM_0901/CA/1054:1059No text annotation
HL_34789.7
HL_9SUM_0911/CA/1091:1096No text annotation
HL_34789.7
HL_9SUM_0921/CA/1158:1167No text annotation
HL_97521.4
HL_9SUM_0931/CA/1208:1217No text annotation
HL_98423.6
HL_9SUM_0941/CA/1266:1271No text annotation
HL_34789.7
HL_9SUM_0951/CA/1279:1286No text annotation
HL_63894.5
HL_9SUM_0961/CA/1372:1378No text annotation
HL_27656.2
HL_9SUM_0971/CA/1475:1482No text annotation
HL_22758.4
HL_9SUM_0981/CA/1525:1536No text annotation
HL_50951.4
HL_9SUM_0991/CA/1569:1577No text annotation
HL_25307.3
HL_9SUM_1001/CA/1753:1758No text annotation
HL_34789.7

Problematic loops

#loop idProblemSequence
HL_9SUM_075No text annotation
HL_9SUM_077No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9SUM_0011/A/5:6,
1/C/146:148		Single bulged C
IL_05642.6
IL_9SUM_0021/A/11:13,
1/C/140:141		Single bulged U
IL_97561.8
IL_9SUM_0031/A/25:26,
1/A/54:56		Single stack bend
IL_15011.6
IL_9SUM_0041/A/29:36,
1/A/43:51		tSH-tHW-tHH-tHS
IL_93502.4
IL_9SUM_0051/A/80:87,
1/A/95:101		8x7 Sarcin-Ricin; G-bulge
IL_62879.2
IL_9SUM_0061/A/121:122,
1/A/133:138		No text annotation
IL_10396.4
IL_9SUM_0071/A/149:150,
1/A/249:251		Single stack bend
IL_15011.6
IL_9SUM_0081/A/155:159,
1/A/241:244		No text annotation
IL_25873.5
IL_9SUM_0091/A/163:167,
1/A/235:237		No text annotation
IL_77718.1
IL_9SUM_0101/A/181:183,
1/A/196:197		Single bulged U
IL_97561.8
IL_9SUM_0111/A/327:329,
1/C/25:26		Single bulged A
IL_14190.5
IL_9SUM_0121/A/366:369,
1/A/380:393		No text annotation
IL_44923.4
IL_9SUM_0131/A/394:400,
1/C/13:19		No text annotation
IL_22311.4
IL_9SUM_0141/A/422:424,
1/A/571:573		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0151/A/461:462,
1/A/527:529		Single bulged A
IL_97561.8
IL_9SUM_0161/A/467:474,
1/A/517:522		No text annotation
IL_22723.1
IL_9SUM_0171/A/476:477,
1/A/513:515		Single bulged U
IL_97561.8
IL_9SUM_0181/A/480:487,
1/A/502:510		No text annotation
IL_25001.3
IL_9SUM_0191/A/614:616,
1/A/735:737		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0201/A/626:630,
1/A/642:646		No text annotation
IL_87030.3
IL_9SUM_0211/A/668:671,
1/A/684:688		UAA/GAN variation
IL_45790.4
IL_9SUM_0221/A/695:696,
1/A/722:724		Single bulged A
IL_14190.5
IL_9SUM_0231/A/698:699,
1/A/718:720		Single bulged U
IL_97561.8
IL_9SUM_0241/A/701:706,
1/A/711:716		No text annotation
IL_28265.2
IL_9SUM_0251/A/746:748,
1/A/881:883		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0261/A/748:752,
1/A/874:881		No text annotation
IL_73855.4
IL_9SUM_0271/A/771:772,
1/A/838:840		Single bulged A
IL_14190.5
IL_9SUM_0281/A/776:777,
1/A/802:804		Single bulged G
IL_28408.5
IL_9SUM_0291/A/777:781,
1/A/798:802		No text annotation
IL_15190.5
IL_9SUM_0301/A/812:815,
1/A/831:833		No text annotation
IL_36931.5
IL_9SUM_0311/A/816:818,
1/A/829:830		Single bulged U
IL_97561.8
IL_9SUM_0321/A/850:852,
1/A/862:866		No text annotation
IL_89509.4
IL_9SUM_0331/A/897:899,
1/A/908:910		Isolated non-canonical cWW pair
IL_71625.6
IL_9SUM_0341/A/912:913,
1/A/1058:1060		Single stack bend
IL_15011.6
IL_9SUM_0351/A/920:929,
1/A/1048:1051		No text annotation
IL_9SUM_0361/A/930:932,
1/A/1046:1047		Single bulged G
IL_28408.5
IL_9SUM_0371/A/938:944,
1/A/999:1005		7x7 Sarcin-Ricin with intercalated A; G-bulge
IL_94128.4
IL_9SUM_0381/A/944:945,
1/A/997:999		Minor groove platform
IL_37129.1
IL_9SUM_0391/A/946:951,
1/A/993:996		No text annotation
IL_16301.4
IL_9SUM_0401/A/953:956,
1/A/988:991		Tandem non-canonical cWW pairs; U in syn
IL_71194.5
IL_9SUM_0411/A/956:958,
1/A/986:988		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0421/A/1016:1018,
1/A/1034:1036		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0431/A/1021:1023,
1/A/1030:1031		Single bulged G
IL_28408.5
IL_9SUM_0441/A/1067:1069,
1/A/1083:1085		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0461/A/1114:1118,
1/A/1275:1279		UAA/GAN
IL_08938.4
IL_9SUM_0471/A/1120:1127,
1/A/1272:1273		No text annotation
IL_11411.4
IL_9SUM_0481/A/1127:1129,
1/A/1271:1272		Single bulged U
IL_97561.8
IL_9SUM_0491/A/1134:1141,
1/A/1261:1266		No text annotation
IL_39054.4
IL_9SUM_0501/A/1141:1152,
1/A/1246:1261		No text annotation
IL_34501.4
IL_9SUM_0511/A/1154:1156,
1/A/1243:1244		Single bulged U
IL_97561.8
IL_9SUM_0521/A/1320:1322,
1/A/1371:1374		No text annotation
IL_84227.2
IL_9SUM_0531/A/1331:1338,
1/A/1358:1362		Kink-turn
IL_90775.4
IL_9SUM_0541/A/1341:1343,
1/A/1354:1355		Single bulged A
IL_97561.8
IL_9SUM_0551/A/1387:1393,
1/A/2269:2274		7x6 Sarcin-Ricin; G-bulge
IL_02666.4
IL_9SUM_0561/A/1444:1448,
1/A/1456:1458		No text annotation
IL_63596.15
IL_9SUM_0571/A/1475:1479,
1/A/1527:1532		UAA/GAN
IL_08938.4
IL_9SUM_0581/A/1483:1485,
1/A/1494:1498		No text annotation
IL_9SUM_0591/A/1560:1563,
1/A/1766:1768		No text annotation
IL_77718.1
IL_9SUM_0601/A/1565:1566,
1/A/1762:1764		No text annotation
IL_97561.8
IL_9SUM_0611/A/1569:1571,
1/A/1754:1759		No text annotation
IL_9SUM_0621/A/1585:1589,
1/A/1749:1753		No text annotation
IL_15190.5
IL_9SUM_0631/A/1601:1603,
1/A/1729:1731		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0641/A/1609:1610,
1/A/1721:1723		Single bulged C
IL_05642.6
IL_9SUM_0651/A/1610:1611,
1/A/1719:1721		Single stack bend
IL_15011.6
IL_9SUM_0661/A/1642:1646,
1/A/1678:1683		No text annotation
IL_9SUM_0671/A/1651:1657,
1/A/1667:1673		No text annotation
IL_93476.4
IL_9SUM_0681/A/1825:1831,
1/A/2261:2264		No text annotation
IL_89862.4
IL_9SUM_0691/A/1837:1839,
1/A/2253:2255		No text annotation
IL_10432.4
IL_9SUM_0701/A/1840:1843,
1/A/2251:2252		Major groove platform; stack outside cWW
IL_74641.5
IL_9SUM_0711/A/1840:1848,
1/A/2248:2252		No text annotation
IL_80252.4
IL_9SUM_0721/A/1843:1848,
1/A/2248:2251		No text annotation
IL_28217.4
IL_9SUM_0731/A/1860:1865,
1/A/1870:1876		No text annotation
IL_20700.4
IL_9SUM_0741/A/1882:1884,
1/A/2021:2023		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_0751/A/1889:1890,
1/A/2013:2016		No text annotation
IL_18824.4
IL_9SUM_0761/A/2043:2044,
1/A/2238:2240		Single bulged A
IL_14190.5
IL_9SUM_0771/A/2071:2076,
1/A/2088:2095		No text annotation
IL_14684.4
IL_9SUM_0781/A/2111:2114,
1/A/2160:2161		No text annotation
IL_55206.4
IL_9SUM_0791/A/2115:2116,
1/A/2156:2159		No text annotation
IL_71421.6
IL_9SUM_0801/A/2119:2125,
1/A/2150:2153		No text annotation
IL_9SUM_0811/A/2126:2132,
1/A/2143:2149		No text annotation
IL_65359.4
IL_9SUM_0821/A/2191:2192,
1/A/2222:2225		No text annotation
IL_24886.5
IL_9SUM_0831/A/2192:2203,
1/A/2219:2222		No text annotation
IL_84014.4
IL_9SUM_0841/A/2306:2309,
1/A/2886:2888		No text annotation
IL_75527.5
IL_9SUM_0851/A/2311:2313,
1/A/2881:2884		No text annotation
IL_80025.4
IL_9SUM_0861/A/2324:2326,
1/A/2711:2712		Single bulged U
IL_97561.8
IL_9SUM_0871/A/2327:2328,
1/A/2707:2710		Minor groove platform
IL_37129.1
IL_9SUM_0881/A/2338:2340,
1/A/2504:2507		No text annotation
IL_87316.5
IL_9SUM_0891/A/2435:2441,
1/A/2484:2487		No text annotation
IL_52092.4
IL_9SUM_0901/A/2514:2515,
1/A/2525:2527		AG tHS outside loop
IL_14190.5
IL_9SUM_0921/A/2566:2568,
1/A/2586:2590		No text annotation
IL_14250.4
IL_9SUM_0931/A/2614:2616,
1/A/2640:2641		Single bulged A
IL_14190.5
IL_9SUM_0941/A/2618:2621,
1/A/2635:2638		Tandem non-canonical cWW pairs with external base triple
IL_15225.5
IL_9SUM_0951/A/2670:2673,
1/A/2687:2688		No text annotation
IL_71706.3
IL_9SUM_0961/A/2723:2726,
1/A/2763:2767		No text annotation
IL_10004.1
IL_9SUM_0971/A/2726:2728,
1/A/2762:2763		No text annotation
IL_46637.5
IL_9SUM_0981/A/2728:2730,
1/A/2758:2762		No text annotation
IL_36931.5
IL_9SUM_0991/A/2735:2739,
1/A/2749:2753		No text annotation
IL_87767.5
IL_9SUM_1001/A/2776:2777,
1/A/2849:2851		No text annotation
IL_46637.5
IL_9SUM_1011/A/2779:2781,
1/A/2843:2847		No text annotation
IL_30722.2
IL_9SUM_1021/A/2781:2782,
1/A/2840:2843		No text annotation
IL_44609.5
IL_9SUM_1031/A/2789:2791,
1/A/2812:2814		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1041/A/2789:2792,
1/A/2809:2814		No text annotation
IL_9SUM_1051/A/2791:2792,
1/A/2809:2812		No text annotation
IL_94991.4
IL_9SUM_1061/A/2818:2820,
1/A/2826:2828		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1071/A/2860:2861,
1/A/2870:2872		Single bulged A
IL_14190.5
IL_9SUM_1081/A/2905:2908,
1/A/3040:3044		Double sheared
IL_58355.5
IL_9SUM_1091/A/2913:2915,
1/A/2941:2943		Isolated non-canonical cWW pair
IL_71625.6
IL_9SUM_1101/A/2919:2926,
1/A/2931:2937		Sarcin-Ricin target in LSU H95; G-bulge
IL_34443.2
IL_9SUM_1111/A/2948:2952,
1/A/2992:2995		No text annotation
IL_06671.4
IL_9SUM_1121/A/2955:2960,
1/A/2985:2989		No text annotation
homologous
IL_9AXU_111
IL_43276.1
IL_9SUM_1131/A/2964:2965,
1/A/2978:2981		No text annotation
IL_44609.5
IL_9SUM_1141/A/3004:3008,
1/A/3028:3032		UAA/GAN
IL_08938.4
IL_9SUM_1151/A/3068:3071,
1/A/3170:3172		Isolated cWH basepair
IL_10892.5
IL_9SUM_1161/A/3072:3074,
1/A/3168:3169		Multiple bulged bases
IL_92286.1
IL_9SUM_1171/A/3080:3082,
1/A/3104:3105		Single bulged A
IL_14190.5
IL_9SUM_1181/A/3082:3091,
1/A/3098:3104		No text annotation
IL_68936.2
IL_9SUM_1191/A/3118:3123,
1/A/3148:3150		No text annotation
IL_12566.7
IL_9SUM_1201/A/3188:3191,
1/A/3199:3202		Tandem non-canonical cWW pairs
IL_71194.5
IL_9SUM_1211/A/3206:3208,
1/A/3275:3276		Single bulged C
IL_97561.8
IL_9SUM_1221/A/3212:3213,
1/A/3269:3271		Single bulged U
IL_97561.8
IL_9SUM_1231/A/3216:3218,
1/A/3261:3266		No text annotation
IL_00086.4
IL_9SUM_1241/A/3220:3225,
1/A/3255:3259		No text annotation
IL_48489.4
IL_9SUM_1251/A/3228:3230,
1/A/3251:3252		Single bulged U
IL_97561.8
IL_9SUM_1261/A/3230:3233,
1/A/3248:3251		Double sheared
IL_58355.5
IL_9SUM_1271/A/3237:3238,
1/A/3241:3244		No text annotation
IL_09092.2
IL_9SUM_1281/B/15:16,
1/B/64:66		Single bulged A
IL_14190.5
IL_9SUM_1291/B/17:19,
1/B/62:63		Single bulged A
IL_14190.5
IL_9SUM_1301/B/22:28,
1/B/54:59		No text annotation
IL_41504.3
IL_9SUM_1311/B/29:31,
1/B/48:53		No text annotation
IL_31690.2
IL_9SUM_1321/B/33:37,
1/B/42:46		Symmetric double minor groove platform
IL_58103.15
IL_9SUM_1331/B/73:81,
1/B/101:107		8x7 Sarcin-Ricin; G-bulge
IL_62167.6
IL_9SUM_1341/B/85:88,
1/B/95:97		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1351/C/64:66,
1/C/89:92		No text annotation
IL_30722.2
IL_9SUM_1361/C/67:68,
1/C/86:88		Single bulged U
IL_05642.6
IL_9SUM_1371/CA/24:26,
1/CA/589:590		Single bulged C
IL_05642.6
IL_9SUM_1381/CA/35:37,
1/CA/460:462		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1391/CA/37:41,
1/CA/455:460		No text annotation
IL_35092.2
IL_9SUM_1401/CA/42:48,
1/CA/420:422		No text annotation
IL_88082.5
IL_9SUM_1411/CA/50:52,
1/CA/417:418		Minor groove platform
IL_26092.1
IL_9SUM_1421/CA/58:63,
1/CA/86:88		No text annotation
IL_61299.9
IL_9SUM_1431/CA/64:70,
1/CA/80:85		No text annotation
IL_02014.1
IL_9SUM_1441/CA/108:111,
1/CA/291:294		Tandem non-canonical cWW pairs
IL_71194.5
IL_9SUM_1451/CA/112:115,
1/CA/289:290		No text annotation
IL_71421.6
IL_9SUM_1461/CA/116:121,
1/CA/284:288		No text annotation
IL_31545.4
IL_9SUM_1471/CA/140:147,
1/CA/164:170		No text annotation
IL_65359.4
IL_9SUM_1481/CA/148:149,
1/CA/161:163		Single stack bend
IL_15011.6
IL_9SUM_1491/CA/184:187,
1/CA/193:196		No text annotation
IL_58355.5
IL_9SUM_1501/CA/201:203,
1/CA/248:252		No text annotation
IL_36931.5
IL_9SUM_1511/CA/203:205,
1/CA/246:248		Isolated non-canonical cWW pair
IL_71625.6
IL_9SUM_1521/CA/254:256,
1/CA/277:278		Single bulged A
IL_14190.5
IL_9SUM_1531/CA/259:262,
1/CA/272:274		No text annotation
IL_77718.1
IL_9SUM_1541/CA/264:265,
1/CA/268:270		Single bulged U
IL_97561.8
IL_9SUM_1551/CA/300:305,
1/CA/337:344		Kink-turn with non-sequential stacking
IL_46174.7
IL_9SUM_1561/CA/307:312,
1/CA/334:335		No text annotation
IL_01372.4
IL_9SUM_1571/CA/352:354,
1/CA/365:370		No text annotation
IL_93336.4
IL_9SUM_1581/CA/378:380,
1/CA/395:397		Isolated cWH basepair
IL_10892.5
IL_9SUM_1591/CA/400:402,
1/CA/409:411		Isolated non-canonical cWW pair
IL_19025.1
IL_9SUM_1601/CA/428:430,
1/CA/452:453		Single bulged U
IL_97561.8
IL_9SUM_1611/CA/432:436,
1/CA/449:450		No text annotation
IL_26900.4
IL_9SUM_1621/CA/436:437,
1/CA/447:449		Single bulged G
IL_28408.5
IL_9SUM_1631/CA/505:507,
1/CA/522:525		No text annotation
IL_54325.1
IL_9SUM_1641/CA/507:509,
1/CA/521:522		Minor groove platform
IL_26092.1
IL_9SUM_1651/CA/539:546,
1/CA/576:577		No text annotation
IL_11411.4
IL_9SUM_1661/CA/546:548,
1/CA/575:576		Single bulged U
IL_97561.8
IL_9SUM_1671/CA/551:557,
1/CA/564:572		Kink-turn related
IL_52042.4
IL_9SUM_1681/CA/605:611,
1/CA/1074:1075		No text annotation
IL_20847.4
IL_9SUM_1691/CA/613:615,
1/CA/943:945		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1701/CA/616:620,
1/CA/938:942		No text annotation
IL_05821.4
IL_9SUM_1711/CA/631:633,
1/CA/677:679		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1721/CA/635:637,
1/CA/673:675		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1731/CA/717:718,
1/CA/772:775		No text annotation
IL_73108.5
IL_9SUM_1741/CA/719:721,
1/CA/769:771		Isolated non-canonical cWW pair
IL_71625.6
IL_9SUM_1751/CA/722:730,
1/CA/761:768		No text annotation
IL_59049.5
IL_9SUM_1761/CA/789:791,
1/CA/821:822		Single bulged C
IL_05642.6
IL_9SUM_1781/CA/838:840,
1/CA/927:930		Isolated non-canonical cWW pair
IL_10892.5
IL_9SUM_1791/CA/841:843,
1/CA/924:926		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1801/CA/844:848,
1/CA/920:923		Tandem non-canonical cWW pairs
IL_15225.5
IL_9SUM_1811/CA/855:858,
1/CA/894:897		Tandem non-canonical cWW pairs
IL_15225.5
IL_9SUM_1821/CA/863:869,
1/CA/880:889		No text annotation
IL_43424.1
IL_9SUM_1831/CA/955:960,
1/CA/984:986		No text annotation
IL_31690.2
IL_9SUM_1841/CA/960:964,
1/CA/980:984		No text annotation
IL_05821.4
IL_9SUM_1851/CA/1004:1006,
1/CA/1065:1071		No text annotation
IL_82706.5
IL_9SUM_1861/CA/1011:1014,
1/CA/1044:1047		Tandem non-canonical cWW pairs
IL_15225.5
IL_9SUM_1871/CA/1020:1024,
1/CA/1034:1038		Partly complementary
IL_71154.6
IL_9SUM_1881/CA/1024:1026,
1/CA/1032:1034		No text annotation
IL_81485.1
IL_9SUM_1891/CA/1081:1088,
1/CA/1099:1104		8x6 Sarcin-Ricin with inserted Y; G-bulge
IL_84044.4
IL_9SUM_1901/CA/1116:1117,
1/CA/1605:1607		Single bulged A
IL_14190.5
IL_9SUM_1911/CA/1119:1121,
1/CA/1602:1603		Single bulged G
IL_28408.5
IL_9SUM_1921/CA/1127:1130,
1/CA/1592:1596		No text annotation
IL_63596.15
IL_9SUM_1931/CA/1135:1137,
1/CA/1553:1555		Isolated cWH basepair
IL_10892.5
IL_9SUM_1941/CA/1143:1145,
1/CA/1440:1442		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1951/CA/1148:1149,
1/CA/1435:1437		Minor groove platform
IL_37129.1
IL_9SUM_1961/CA/1183:1185,
1/CA/1424:1426		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_1981/CA/1194:1203,
1/CA/1222:1229		No text annotation
homologous
IL_9H3G_216
NA
IL_9SUM_1991/CA/1204:1206,
1/CA/1219:1221		No text annotation
IL_75737.2
IL_9SUM_2001/CA/1238:1240,
1/CA/1416:1417		Single bulged U
IL_97561.8
IL_9SUM_2011/CA/1242:1246,
1/CA/1412:1414		No text annotation
IL_82453.4
IL_9SUM_2021/CA/1242:1247,
1/CA/1410:1414		No text annotation
geometric
IL_9PN5_205
NA
IL_9SUM_2031/CA/1242:1248,
1/CA/1406:1414		No text annotation
IL_9SUM_2041/CA/1246:1247,
1/CA/1410:1412		Single bulged G
IL_28408.5
IL_9SUM_2051/CA/1247:1248,
1/CA/1406:1410		Minor groove platform
IL_26092.1
IL_9SUM_2061/CA/1250:1251,
1/CA/1402:1404		Single bulged A
IL_14190.5
IL_9SUM_2071/CA/1260:1262,
1/CA/1293:1295		Isolated cWH basepair
IL_01003.7
IL_9SUM_2081/CA/1276:1278,
1/CA/1287:1288		Minor groove platform
IL_26092.1
IL_9SUM_2091/CA/1314:1317,
1/CA/1353:1356		No text annotation
IL_78800.5
IL_9SUM_2101/CA/1321:1323,
1/CA/1345:1349		No text annotation
IL_36931.5
IL_9SUM_2111/CA/1365:1367,
1/CA/1383:1388		No text annotation
IL_97340.2
IL_9SUM_2121/CA/1456:1463,
1/CA/1494:1502		No text annotation
IL_74283.2
IL_9SUM_2131/CA/1464:1469,
1/CA/1488:1493		No text annotation
IL_12629.2
IL_9SUM_2141/CA/1471:1473,
1/CA/1484:1486		No text annotation
IL_81485.1
IL_9SUM_2151/CA/1515:1520,
1/CA/1541:1546		No text annotation
IL_28265.2
IL_9SUM_2161/CA/1611:1613,
1/CA/1739:1742		No text annotation
IL_18228.4
IL_9SUM_2171/CA/1613:1616,
1/CA/1735:1739		No text annotation
IL_25873.5
IL_9SUM_2181/CA/1617:1619,
1/CA/1732:1734		Isolated non-canonical cWW pair
IL_10892.5
IL_9SUM_2191/CA/1619:1622,
1/CA/1728:1732		No text annotation
IL_26271.1
IL_9SUM_2201/CA/1625:1627,
1/CA/1723:1725		Isolated non-canonical cWW pair
IL_01003.7
IL_9SUM_2211/CA/1628:1631,
1/CA/1719:1722		Double sheared
IL_58355.5
IL_9SUM_2221/CA/1631:1633,
1/CA/1718:1719		Single bulged U
IL_97561.8
IL_9SUM_2231/CA/1640:1642,
1/CA/1709:1711		No text annotation
IL_81485.1
IL_9SUM_2241/CA/1644:1647,
1/CA/1704:1707		Double sheared
IL_58355.5
IL_9SUM_2251/CA/1650:1653,
1/CA/1698:1701		Tandem non-canonical cWW pairs
IL_71194.5
IL_9SUM_2261/CA/1653:1657,
1/CA/1694:1698		No text annotation
IL_15190.5

Problematic loops

#loop idProblemSequence
IL_9SUM_045No text annotation
IL_9SUM_091No text annotation
IL_9SUM_177No text annotation
IL_9SUM_197Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9SUM_0011/A/111:121,
1/A/138:147,
1/A/253:257		No text annotation
J3_69230.4
J3_9SUM_0021/A/111:122,
1/A/133:147,
1/A/253:257		No text annotation
J3_98114.4
J3_9SUM_0031/A/330:346,
1/A/353:358,
1/C/21:24		No text annotation
J3_07616.4
J3_9SUM_0041/A/359:366,
1/A/393:394,
1/C/19:20		No text annotation
J3_68715.4
J3_9SUM_0051/A/359:369,
1/A/380:394,
1/C/19:20		No text annotation
J3_17917.4
J3_9SUM_0061/A/426:431,
1/A/442:444,
1/A/564:569		No text annotation
J3_9SUM_0071/A/451:452,
1/A/538:547,
1/A/552:557		No text annotation
J3_86133.3
J3_9SUM_0081/A/757:763,
1/A/848:850,
1/A/866:869		No text annotation
J3_46658.4
J3_9SUM_0091/A/772:774,
1/A/806:810,
1/A/835:838		No text annotation
J3_69816.4
J3_9SUM_0101/A/933:934,
1/A/1009:1013,
1/A/1039:1045		No text annotation
J3_22278.2
J3_9SUM_0111/A/1422:1428,
1/A/1799:1801,
1/A/1813:1816		No text annotation
J3_05025.4
J3_9SUM_0121/A/1431:1434,
1/A/1779:1785,
1/A/1794:1796		No text annotation
J3_76012.4
J3_9SUM_0131/A/1469:1474,
1/A/1533:1537,
1/A/1554:1555		No text annotation
J3_94309.4
J3_9SUM_0141/A/1481:1483,
1/A/1498:1505,
1/A/1520:1525		No text annotation
J3_9SUM_0151/A/1481:1485,
1/A/1494:1505,
1/A/1520:1525		No text annotation
J3_9SUM_0161/A/1571:1572,
1/A/1581:1585,
1/A/1753:1754		No text annotation
J3_05348.4
J3_9SUM_0171/A/1594:1598,
1/A/1734:1735,
1/A/1739:1744		No text annotation
J3_08594.4
J3_9SUM_0181/A/2347:2350,
1/A/2427:2432,
1/A/2490:2497		No text annotation
J3_63968.2
J3_9SUM_0191/A/2551:2553,
1/A/2654:2665,
1/A/2693:2698		No text annotation
J3_04772.4
J3_9SUM_0201/A/2564:2566,
1/A/2590:2592,
1/A/2601:2606		No text annotation
J3_05327.4
J3_9SUM_0211/A/2786:2789,
1/A/2814:2816,
1/A/2830:2836		No text annotation
J3_44047.4
J3_9SUM_0221/A/3074:3079,
1/A/3106:3114,
1/A/3154:3168		No text annotation
J3_9SUM_0231/A/3187:3188,
1/A/3202:3206,
1/A/3276:3277		No text annotation
J3_9SUM_0241/B/9:14,
1/B/67:68,
1/B/112:113		No text annotation
J3_26985.4
J3_9SUM_0251/C/44:45,
1/C/58:64,
1/C/92:96		No text annotation
J3_01004.4
J3_9SUM_0261/CA/41:42,
1/CA/422:428,
1/CA/453:455		No text annotation
J3_58657.4
J3_9SUM_0271/CA/41:48,
1/CA/420:428,
1/CA/453:455		No text annotation
J3_63856.4
J3_9SUM_0281/CA/622:624,
1/CA/831:836,
1/CA/932:936		No text annotation
J3_17385.8
J3_9SUM_0291/CA/731:734,
1/CA/744:746,
1/CA/755:760		No text annotation
J3_97642.5
J3_9SUM_0301/CA/851:855,
1/CA/897:906,
1/CA/913:917		No text annotation
J3_92123.1
J3_9SUM_0311/CA/1007:1009,
1/CA/1049:1053,
1/CA/1060:1064		No text annotation
J3_41498.1
J3_9SUM_0321/CA/1131:1134,
1/CA/1556:1562,
1/CA/1584:1591		No text annotation
J3_85722.4
J3_9SUM_0331/CA/1138:1141,
1/CA/1444:1446,
1/CA/1549:1552		No text annotation
J3_44359.4
J3_9SUM_0341/CA/1150:1157,
1/CA/1168:1179,
1/CA/1430:1434		No text annotation
J3_88451.4
J3_9SUM_0351/CA/1185:1190,
1/CA/1233:1238,
1/CA/1417:1424		No text annotation
J3_9SUM_0361/CA/1252:1258,
1/CA/1297:1302,
1/CA/1395:1401		No text annotation
J3_05084.1
J3_9SUM_0371/CA/1263:1264,
1/CA/1273:1276,
1/CA/1288:1292		No text annotation
J3_76043.7
J3_9SUM_0381/CA/1306:1308,
1/CA/1362:1365,
1/CA/1388:1391		No text annotation
J3_82365.8
J3_9SUM_0391/CA/1306:1308,
1/CA/1362:1367,
1/CA/1383:1391		No text annotation
J3_69856.2
J3_9SUM_0401/CA/1446:1450,
1/CA/1508:1515,
1/CA/1546:1549		No text annotation
J3_03192.4
J4_9SUM_0011/A/110:111,
1/A/257:262,
1/A/283:289,
1/A/306:309		No text annotation
J4_94698.4
J4_9SUM_0021/A/177:181,
1/A/197:200,
1/A/204:206,
1/A/218:222		No text annotation
J4_9SUM_0031/A/1394:1400,
1/A/1418:1419,
1/A/1819:1822,
1/A/2267:2268		No text annotation
J4_19484.2
J4_9SUM_0041/A/1435:1439,
1/A/1463:1468,
1/A/1556:1557,
1/A/1771:1778		No text annotation
J4_17758.2
J4_9SUM_0051/A/1614:1615,
1/A/1633:1638,
1/A/1687:1693,
1/A/1715:1716		No text annotation
J4_9SUM_0061/A/2045:2049,
1/A/2061:2065,
1/A/2101:2105,
1/A/2232:2237		No text annotation
J4_78485.4
J4_9SUM_0071/A/2107:2109,
1/A/2163:2164,
1/A/2182:2191,
1/A/2225:2230		No text annotation
J4_21738.2
J4_9SUM_0081/A/2554:2558,
1/A/2612:2614,
1/A/2641:2642,
1/A/2651:2653		No text annotation
J4_9SUM_0091/A/2554:2558,
1/A/2612:2616,
1/A/2640:2642,
1/A/2651:2653		No text annotation
J4_59590.4
J4_9SUM_0101/A/2911:2913,
1/A/2943:2944,
1/A/2999:3001,
1/A/3035:3037		No text annotation
J4_37757.4
J4_9SUM_0111/CA/98:106,
1/CA/296:298,
1/CA/346:350,
1/CA/372:373		No text annotation
J4_15241.5
J4_9SUM_0121/CA/611:613,
1/CA/945:950,
1/CA/991:1002,
1/CA/1073:1074		No text annotation
J4_14595.4
J5_9SUM_0011/A/18:20,
1/C/35:42,
1/C/98:103,
1/C/111:112,
1/C/133:135		No text annotation
J5_27223.4
J5_9SUM_0021/A/604:609,
1/A/742:745,
1/A/884:887,
1/A/1319:1320,
1/A/1374:1380		No text annotation
J5_08384.4
J5_9SUM_0031/A/621:624,
1/A/648:652,
1/A/659:664,
1/A/692:694,
1/A/725:730		No text annotation
homologous
J5_9H3G_003
NA
J5_9SUM_0041/A/1848:1856,
1/A/1880:1881,
1/A/2024:2025,
1/A/2029:2037,
1/A/2246:2248		No text annotation
J5_99177.4
J5_9SUM_0051/A/2314:2321,
1/A/2715:2723,
1/A/2767:2776,
1/A/2851:2857,
1/A/2875:2880		No text annotation
J5_83685.3
J5_9SUM_0061/A/2331:2334,
1/A/2511:2514,
1/A/2527:2528,
1/A/2550:2551,
1/A/2698:2704		No text annotation
J5_96125.4
J5_9SUM_0071/CA/31:35,
1/CA/462:468,
1/CA/498:505,
1/CA/525:535,
1/CA/581:584		No text annotation
J5_02492.5
J5_9SUM_0081/CA/54:57,
1/CA/89:96,
1/CA/375:377,
1/CA/398:400,
1/CA/411:415		No text annotation
J5_58574.4
J6_9SUM_0011/A/20:25,
1/A/56:66,
1/A/73:77,
1/A/104:108,
1/A/311:321,
1/C/32:35		No text annotation
J6_18219.4
J6_9SUM_0021/A/2331:2334,
1/A/2511:2514,
1/A/2527:2528,
1/A/2550:2553,
1/A/2654:2665,
1/A/2693:2704		No text annotation
J6_84807.4
J7_9SUM_0011/A/892:897,
1/A/910:911,
1/A/1061:1064,
1/A/1088:1093,
1/A/1104:1108,
1/A/1285:1286,
1/A/1309:1314		No text annotation
J7_60081.4

Problematic loops

No problematic loops


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