HL_9SUM_008

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9SUM|1|A|G|210, 9SUM|1|A|A|211, 9SUM|1|A|C|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9SUM|1|A|G|208
9SUM|1|A|U|209
9SUM|1|A|G|210
9SUM|1|A|A|211
9SUM|1|A|C|212
9SUM|1|A|A|213
9SUM|1|A|G|214
9SUM|1|A|C|215
9SUM|1|A|C|216

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L4-A

Chain a

Ribosomal protein L24