HL_9SUM_040

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

9SUM|1|A|G|2026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SUM_040 not in the Motif Atlas

Homologous match to HL_9PN5_043

Geometric discrepancy: 0.1067

The information below is about HL_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17051.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9SUM|1|A|G|2025
9SUM|1|A|G|2026
9SUM|1|A|U|2027
9SUM|1|A|A|2028
9SUM|1|A|C|2029

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain Y

60S ribosomal protein L24