HL_9SUM_045

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9SUM|1|A|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9SUM|1|A|U|2207
9SUM|1|A|C|2208
9SUM|1|A|U|2209
9SUM|1|A|A|2210
9SUM|1|A|A|2211
9SUM|1|A|U|2212
9SUM|1|A|U|2213
9SUM|1|A|A|2214
9SUM|1|A|G|2215

Current chains

Chain A

25S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain X

60S ribosomal protein L23-B