HL_9SUM_060

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9SUM|1|A|G|3017, 9SUM|1|A|C|3021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

9SUM|1|A|C|3011
9SUM|1|A|U|3012
9SUM|1|A|G|3013
9SUM|1|A|A|3014
9SUM|1|A|A|3015
9SUM|1|A|C|3016
9SUM|1|A|G|3017
9SUM|1|A|C|3018
9SUM|1|A|C|3019
9SUM|1|A|U|3020
9SUM|1|A|C|3021
9SUM|1|A|U|3022
9SUM|1|A|A|3023
9SUM|1|A|A|3024
9SUM|1|A|G|3025

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L9-B

Chain Q

60S ribosomal protein L16-B

Chain o

Large ribosomal subunit protein eL40