HL_9SUM_080

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9SUM|1|CA|C|391, 9SUM|1|CA|G|392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.4

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|C|382
9SUM|1|CA|C|383
9SUM|1|CA|U|384
9SUM|1|CA|G|385
9SUM|1|CA|A|386
9SUM|1|CA|G|387
9SUM|1|CA|A|388
9SUM|1|CA|A|389
9SUM|1|CA|A|390
9SUM|1|CA|C|391
9SUM|1|CA|G|392
9SUM|1|CA|G|393

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZA

40S ribosomal protein S8

Chain ZQ

40S ribosomal protein S24

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S6