HL_9SUM_083

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.4

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9SUM|1|CA|A|509
9SUM|1|CA|A|510
9SUM|1|CA|U|511
9SUM|1|CA|G|512
9SUM|1|CA|U|513
9SUM|1|CA|A|514
9SUM|1|CA|A|515
9SUM|1|CA|A|516
9SUM|1|CA|U|517
9SUM|1|CA|A|518
9SUM|1|CA|C|519
9SUM|1|CA|C|520
9SUM|1|CA|U|521

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZB

40S ribosomal protein S9-A

Chain ZQ

40S ribosomal protein S24