HL_9SUM_090

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9SUM|1|CA|A|1054
9SUM|1|CA|G|1055
9SUM|1|CA|A|1056
9SUM|1|CA|A|1057
9SUM|1|CA|A|1058
9SUM|1|CA|U|1059

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZO

40S ribosomal protein S22

Chain ZS

40S ribosomal protein S26

Chain u

Rps21 ribosomal protein