HL_9SUM_098

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AUUGCAAUUGUU

Length

12 nucleotides

Bulged bases

9SUM|1|CA|U|1532, 9SUM|1|CA|U|1533, 9SUM|1|CA|G|1534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.4

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|A|1525
9SUM|1|CA|U|1526
9SUM|1|CA|U|1527
9SUM|1|CA|G|1528
9SUM|1|CA|C|1529
9SUM|1|CA|A|1530
9SUM|1|CA|A|1531
9SUM|1|CA|U|1532
9SUM|1|CA|U|1533
9SUM|1|CA|G|1534
9SUM|1|CA|U|1535
9SUM|1|CA|U|1536

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZG

40S ribosomal protein S15

Chain ZJ

40S ribosomal protein S18

Chain ZK

40S ribosomal protein S19-A

Chain ZV

Small ribosomal subunit protein uS14