HL_9SX2_015

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SX2_015 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.1194

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SX2|1|A|C|689
9SX2|1|A|G|690
9SX2|1|A|G|691
9SX2|1|A|U|692
9SX2|1|A|G|693
9SX2|1|A|A|694
9SX2|1|A|A|695
9SX2|1|A|A|696
9SX2|1|A|U|697
9SX2|1|A|G|698

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21