HL_9SX2_017

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9SX2|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SX2_017 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.1338

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SX2|1|A|G|786
9SX2|1|A|A|787
9SX2|1|A|U|788
9SX2|1|A|U|789
9SX2|1|A|A|790
9SX2|1|A|G|791
9SX2|1|A|A|792
9SX2|1|A|U|793
9SX2|1|A|A|794
9SX2|1|A|C|795
9SX2|1|A|C|796

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21