HL_9SYH_048

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9SYH|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYH_048 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1141

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SYH|1|a|G|410
9SYH|1|a|G|411
9SYH|1|a|A|412
9SYH|1|a|C|413
9SYH|1|a|C|414
9SYH|1|a|A|415
9SYH|1|a|U|416
9SYH|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains