HL_9SYH_086

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9SYH|1|a|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYH_086 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1072

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9SYH|1|a|C|2248
9SYH|1|a|U|2249
9SYH|1|a|G|2250
9SYH|1|a|OMG|2251
9SYH|1|a|G|2252
9SYH|1|a|G|2253
9SYH|1|a|C|2254
9SYH|1|a|G|2255
9SYH|1|a|G|2256

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27