HL_9SYR_004

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GCGGC

Length

5 nucleotides

Bulged bases

9SYR|1|L1|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_004 not in the Motif Atlas

Homologous match to HL_9H3G_008

Geometric discrepancy: 0.59

The information below is about HL_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.6

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9SYR|1|L1|G|132
9SYR|1|L1|C|133
9SYR|1|L1|G|134
9SYR|1|L1|G|135
9SYR|1|L1|C|136

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37

Chain LH

60S ribosomal protein L15

Chain Ly

60S ribosomal protein L35