RNA 3D Hub //

9SYR Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9SYR_0011/L1/37:44No text annotation
HL_9SYR_0021/L1/68:73No text annotation
HL_9SYR_0031/L1/89:95No text annotation
HL_9SYR_0051/L1/204:211No text annotation
HL_9SYR_0061/L1/222:226No text annotation
HL_9SYR_0071/L1/230:238No text annotation
HL_9SYR_0081/L1/289:298No text annotation
HL_9SYR_0091/L1/314:323No text annotation
HL_9SYR_0101/L1/368:373No text annotation
HL_9SYR_0111/L1/393:398No text annotation
HL_9SYR_0121/L1/1178:1183No text annotation
HL_9SYR_0131/L1/1317:1326No text annotation
HL_9SYR_0141/L1/1364:1373No text annotation
HL_9SYR_0151/L1/1389:1394No text annotation
HL_9SYR_0161/L1/1436:1448No text annotation
HL_9SYR_0171/L1/1480:1484No text annotation
HL_9SYR_0181/L1/1561:1566No text annotation
HL_9SYR_0191/L1/1593:1602No text annotation
HL_9SYR_0201/L1/1627:1635No text annotation
HL_9SYR_0211/L1/1675:1680No text annotation
HL_9SYR_0221/L1/1816:1823No text annotation
HL_9SYR_0231/L1/1864:1870No text annotation
HL_9SYR_0241/L1/1886:1893No text annotation
HL_9SYR_0251/L1/2257:2261No text annotation
HL_9SYR_0261/L1/2317:2322No text annotation
HL_9SYR_0271/L1/2376:2384No text annotation
HL_9SYR_0281/L1/2420:2426No text annotation
HL_9SYR_0291/L1/2458:2463No text annotation
HL_9SYR_0301/L1/2469:2471No text annotation
HL_9SYR_0311/L1/2523:2532No text annotation
HL_9SYR_0331/L1/2578:2583No text annotation
HL_9SYR_0341/L1/2624:2632No text annotation
HL_9SYR_0351/L1/2664:2670No text annotation
HL_9SYR_0361/L1/2738:2742No text annotation
HL_9SYR_0371/L1/2792:2799No text annotation
HL_9SYR_0381/L1/2810:2816No text annotation
HL_9SYR_0391/L1/2872:2877No text annotation
HL_9SYR_0401/L1/3614:3618No text annotation
HL_9SYR_0411/L1/3639:3649No text annotation
HL_9SYR_0421/L1/3668:3674No text annotation
HL_9SYR_0431/L1/3724:3729No text annotation
HL_9SYR_0441/L1/3757:3767No text annotation
HL_9SYR_0451/L1/3796:3804No text annotation
HL_9SYR_0461/L1/3873:3882No text annotation
HL_9SYR_0471/L1/4193:4201No text annotation
HL_9SYR_0481/L1/4210:4222No text annotation
HL_9SYR_0491/L1/4250:4258No text annotation
HL_9SYR_0501/L1/4270:4277No text annotation
HL_9SYR_0511/L1/4301:4309No text annotation
HL_9SYR_0521/L1/4321:4326No text annotation
HL_9SYR_0531/L1/4352:4362No text annotation
HL_9SYR_0541/L1/4417:4425No text annotation
HL_9SYR_0551/L1/4474:4481No text annotation
HL_9SYR_0561/L1/4497:4503No text annotation
HL_9SYR_0571/L1/4540:4545No text annotation
HL_9SYR_0581/L1/4603:4608No text annotation
HL_9SYR_0591/L1/4646:4651No text annotation
HL_9SYR_0601/L1/4688:4702No text annotation
HL_9SYR_0611/L1/4907:4914No text annotation
HL_9SYR_0621/L1/4975:4983No text annotation
HL_9SYR_0631/L2/32:45No text annotation
geometric
HL_8QYX_071
HL_01182.1
HL_9SYR_0641/L2/36:41No text annotation
homologous
HL_7A0S_069
HL_59381.2
HL_9SYR_0651/L2/86:91GNRA
homologous
HL_4V9F_072
HL_34789.4
HL_9SYR_0661/L3/47:56No text annotation
HL_9SYR_0671/L3/107:112No text annotation
HL_9SYR_0681/S1/7:17No text annotation
HL_9SYR_0691/S1/69:80No text annotation
HL_9SYR_0701/S1/156:162No text annotation
HL_9SYR_0721/S1/288:295No text annotation
HL_9SYR_0741/S1/377:387No text annotation
HL_9SYR_0751/S1/416:421No text annotation
HL_9SYR_0761/S1/441:452No text annotation
HL_9SYR_0771/S1/462:467No text annotation
HL_9SYR_0781/S1/498:504No text annotation
HL_9SYR_0801/S1/569:581No text annotation
HL_9SYR_0811/S1/618:623No text annotation
HL_9SYR_0821/S1/820:828No text annotation
HL_9SYR_0831/S1/833:841No text annotation
HL_9SYR_0851/S1/957:966No text annotation
HL_9SYR_0861/S1/994:999No text annotation
HL_9SYR_0871/S1/1054:1064No text annotation
HL_9SYR_0881/S1/1114:1119No text annotation
HL_9SYR_0891/S1/1141:1146No text annotation
HL_9SYR_0901/S1/1178:1183No text annotation
HL_9SYR_0911/S1/1245:1254No text annotation
HL_9SYR_0921/S1/1295:1304No text annotation
HL_9SYR_0931/S1/1353:1358No text annotation
HL_9SYR_0941/S1/1366:1373No text annotation
HL_9SYR_0951/S1/1417:1422No text annotation
HL_9SYR_0961/S1/1460:1466No text annotation
HL_9SYR_0971/S1/1565:1570No text annotation
HL_9SYR_0981/S1/1614:1625No text annotation
HL_9SYR_0991/S1/1658:1666No text annotation
HL_9SYR_1011/S1/1847:1852No text annotation
HL_9SYR_1021/S3/30:40No text annotation
homologous
HL_5IB8_208
HL_14063.2
HL_9SYR_1031/S3/53:61T-loop with 2 stacked bulged bases
homologous
HL_5AXM_003
HL_33597.3

Problematic loops

#loop idProblemSequence
HL_9SYR_004No text annotation
HL_9SYR_032No text annotation
HL_9SYR_071No text annotation
HL_9SYR_073No text annotation
HL_9SYR_079No text annotation
HL_9SYR_084No text annotation
HL_9SYR_100No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9SYR_0011/L1/6:7,
1/L3/149:151		No text annotation
IL_9SYR_0021/L1/12:14,
1/L3/143:144		No text annotation
IL_9SYR_0031/L1/16:18,
1/L3/139:141		No text annotation
IL_9SYR_0041/L1/26:27,
1/L1/55:57		No text annotation
IL_9SYR_0051/L1/30:37,
1/L1/44:52		No text annotation
IL_9SYR_0061/L1/81:88,
1/L1/96:102		No text annotation
IL_9SYR_0071/L1/118:121,
1/L1/152:153		No text annotation
IL_9SYR_0081/L1/118:122,
1/L1/147:153		No text annotation
IL_9SYR_0091/L1/121:122,
1/L1/147:152		No text annotation
IL_9SYR_0101/L1/125:126,
1/L1/142:144		No text annotation
IL_9SYR_0111/L1/168:173,
1/L1/263:267		No text annotation
IL_9SYR_0121/L1/195:196,
1/L1/244:246		No text annotation
IL_9SYR_0131/L1/199:201,
1/L1/214:215		No text annotation
IL_9SYR_0141/L1/339:342,
1/L3/32:33		No text annotation
IL_9SYR_0151/L1/348:350,
1/L3/25:26		No text annotation
IL_9SYR_0161/L1/387:390,
1/L1/401:414		No text annotation
IL_9SYR_0171/L1/415:421,
1/L3/13:19		No text annotation
IL_9SYR_0181/L1/443:446,
1/L1/1300:1304		No text annotation
IL_9SYR_0191/L1/448:450,
1/L1/1297:1298		No text annotation
IL_9SYR_0201/L1/459:460,
1/L1/695:697		No text annotation
IL_9SYR_0211/L1/462:464,
1/L1/691:693		No text annotation
IL_9SYR_0221/L1/466:472,
1/L1/682:689		No text annotation
IL_9SYR_0231/L1/480:482,
1/L1/672:674		No text annotation
IL_9SYR_0241/L1/482:485,
1/L1/671:672		No text annotation
IL_9SYR_0271/L1/508:510,
1/L1/649:650		No text annotation
IL_9SYR_0281/L1/709:710,
1/L1/1286:1288		No text annotation
IL_9SYR_0291/L1/723:724,
1/L1/942:945		No text annotation
IL_9SYR_0301/L1/727:731,
1/L1/938:939		No text annotation
IL_9SYR_0311/L1/732:735,
1/L1/928:937		No text annotation
IL_9SYR_0321/L1/735:739,
1/L1/925:928		No text annotation
IL_9SYR_0331/L1/740:742,
1/L1/922:924		No text annotation
IL_9SYR_0341/L1/745:752,
1/L1/911:919		No text annotation
IL_9SYR_0351/L1/1073:1074,
1/L1/1237:1239		No text annotation
IL_9SYR_0361/L1/1082:1084,
1/L1/1213:1217		No text annotation
IL_9SYR_0371/L1/1086:1087,
1/L1/1209:1211		No text annotation
IL_9SYR_0391/L1/1173:1175,
1/L1/1186:1188		No text annotation
IL_9SYR_0401/L1/1244:1245,
1/L1/1265:1267		No text annotation
IL_9SYR_0411/L1/1357:1360,
1/L1/1379:1382		No text annotation
IL_9SYR_0421/L1/1357:1361,
1/L1/1376:1382		No text annotation
IL_9SYR_0431/L1/1360:1361,
1/L1/1376:1379		No text annotation
IL_9SYR_0441/L1/1425:1429,
1/L1/1455:1460		No text annotation
IL_9SYR_0451/L1/1431:1434,
1/L1/1450:1453		No text annotation
IL_9SYR_0461/L1/1467:1468,
1/L1/1496:1498		No text annotation
IL_9SYR_0471/L1/1474:1476,
1/L1/1489:1490		No text annotation
IL_9SYR_0481/L1/1479:1480,
1/L1/1484:1486		No text annotation
IL_9SYR_0491/L1/1520:1522,
1/L1/1655:1657		No text annotation
IL_9SYR_0501/L1/1522:1526,
1/L1/1648:1655		No text annotation
IL_9SYR_0511/L1/1545:1546,
1/L1/1612:1614		No text annotation
IL_9SYR_0521/L1/1550:1551,
1/L1/1576:1578		No text annotation
IL_9SYR_0531/L1/1551:1555,
1/L1/1572:1576		No text annotation
IL_9SYR_0541/L1/1586:1589,
1/L1/1605:1607		No text annotation
IL_9SYR_0551/L1/1590:1592,
1/L1/1603:1604		No text annotation
IL_9SYR_0561/L1/1624:1626,
1/L1/1636:1640		No text annotation
IL_9SYR_0571/L1/1671:1673,
1/L1/1682:1684		No text annotation
IL_9SYR_0581/L1/1686:1688,
1/L1/1848:1851		No text annotation
IL_9SYR_0591/L1/1723:1725,
1/L1/1838:1839		No text annotation
IL_9SYR_0601/L1/1732:1738,
1/L1/1790:1797		No text annotation
IL_9SYR_0611/L1/1739:1744,
1/L1/1786:1789		No text annotation
IL_9SYR_0621/L1/1746:1751,
1/L1/1779:1784		No text annotation
IL_9SYR_0631/L1/1814:1816,
1/L1/1823:1824		No text annotation
IL_9SYR_0641/L1/1858:1860,
1/L1/1874:1876		No text annotation
IL_9SYR_0661/L1/1905:1909,
1/L1/2067:2071		No text annotation
IL_9SYR_0671/L1/1911:1918,
1/L1/2064:2065		No text annotation
IL_9SYR_0681/L1/1918:1920,
1/L1/2063:2064		No text annotation
IL_9SYR_0691/L1/1920:1922,
1/L1/2062:2063		No text annotation
IL_9SYR_0701/L1/1926:1933,
1/L1/2053:2058		No text annotation
IL_9SYR_0711/L1/1933:1944,
1/L1/2038:2053		No text annotation
IL_9SYR_0721/L1/1946:1948,
1/L1/2035:2036		No text annotation
IL_9SYR_0731/L1/2083:2085,
1/L1/2272:2273		No text annotation
IL_9SYR_0741/L1/2290:2292,
1/L1/2342:2345		No text annotation
IL_9SYR_0751/L1/2299:2301,
1/L1/2334:2335		No text annotation
IL_9SYR_0761/L1/2302:2309,
1/L1/2329:2333		No text annotation
IL_9SYR_0771/L1/2312:2314,
1/L1/2325:2326		No text annotation
IL_9SYR_0781/L1/2358:2364,
1/L1/3858:3863		No text annotation
IL_9SYR_0791/L1/2406:2409,
1/L1/2783:2784		No text annotation
IL_9SYR_0801/L1/2415:2419,
1/L1/2427:2429		No text annotation
IL_9SYR_0811/L1/2446:2450,
1/L1/2509:2514		No text annotation
IL_9SYR_0831/L1/2549:2550,
1/L1/2768:2770		No text annotation
IL_9SYR_0841/L1/2589:2593,
1/L1/2752:2756		No text annotation
IL_9SYR_0851/L1/2613:2614,
1/L1/2724:2726		No text annotation
IL_9SYR_0861/L1/2614:2615,
1/L1/2722:2724		No text annotation
IL_9SYR_0871/L1/2646:2648,
1/L1/2685:2688		No text annotation
IL_9SYR_0881/L1/2651:2653,
1/L1/2681:2682		No text annotation
IL_9SYR_0891/L1/2656:2662,
1/L1/2672:2678		No text annotation
IL_9SYR_0901/L1/2704:2705,
1/L1/2710:2712		No text annotation
IL_9SYR_0911/L1/2832:2838,
1/L1/3850:3853		No text annotation
IL_9SYR_0921/L1/2844:2846,
1/L1/3842:3844		No text annotation
IL_9SYR_0931/L1/2847:2850,
1/L1/3840:3841		No text annotation
IL_9SYR_0941/L1/2847:2855,
1/L1/3837:3841		No text annotation
IL_9SYR_0951/L1/2850:2855,
1/L1/3837:3840		No text annotation
IL_9SYR_0961/L1/2867:2872,
1/L1/2877:2883		No text annotation
IL_9SYR_0971/L1/2889:2891,
1/L1/3610:3612		No text annotation
IL_9SYR_0981/L1/2896:2897,
1/L1/3602:3605		No text annotation
IL_9SYR_0991/L1/3632:3633,
1/L1/3827:3829		No text annotation
IL_9SYR_1001/L1/3660:3665,
1/L1/3677:3684		No text annotation
IL_9SYR_1011/L1/3700:3703,
1/L1/3749:3750		No text annotation
IL_9SYR_1021/L1/3704:3705,
1/L1/3745:3748		No text annotation
IL_9SYR_1031/L1/3708:3714,
1/L1/3739:3742		No text annotation
IL_9SYR_1041/L1/3715:3721,
1/L1/3732:3738		No text annotation
IL_9SYR_1051/L1/3780:3781,
1/L1/3811:3814		No text annotation
IL_9SYR_1061/L1/3781:3792,
1/L1/3808:3811		No text annotation
IL_9SYR_1071/L1/3895:3898,
1/L1/4563:4565		No text annotation
IL_9SYR_1081/L1/3900:3902,
1/L1/4558:4561		No text annotation
IL_9SYR_1091/L1/3913:3915,
1/L1/4388:4389		No text annotation
IL_9SYR_1101/L1/3916:3917,
1/L1/4384:4387		No text annotation
IL_9SYR_1111/L1/3927:3929,
1/L1/4181:4184		No text annotation
IL_9SYR_1121/L1/4082:4088,
1/L1/4161:4164		No text annotation
IL_9SYR_1131/L1/4191:4192,
1/L1/4202:4204		No text annotation
IL_9SYR_1141/L1/4243:4245,
1/L1/4263:4267		No text annotation
IL_9SYR_1151/L1/4291:4293,
1/L1/4317:4318		No text annotation
IL_9SYR_1161/L1/4295:4298,
1/L1/4312:4315		No text annotation
IL_9SYR_1171/L1/4347:4350,
1/L1/4364:4365		No text annotation
IL_9SYR_1181/L1/4400:4401,
1/L1/4442:4444		No text annotation
IL_9SYR_1191/L1/4401:4403,
1/L1/4440:4442		No text annotation
IL_9SYR_1201/L1/4403:4405,
1/L1/4439:4440		No text annotation
IL_9SYR_1211/L1/4405:4407,
1/L1/4435:4439		No text annotation
IL_9SYR_1221/L1/4412:4416,
1/L1/4426:4430		No text annotation
IL_9SYR_1231/L1/4453:4454,
1/L1/4526:4528		No text annotation
IL_9SYR_1241/L1/4456:4458,
1/L1/4520:4524		No text annotation
IL_9SYR_1251/L1/4458:4459,
1/L1/4517:4520		No text annotation
IL_9SYR_1261/L1/4466:4468,
1/L1/4489:4491		No text annotation
IL_9SYR_1271/L1/4466:4470,
1/L1/4485:4491		No text annotation
IL_9SYR_1281/L1/4468:4470,
1/L1/4485:4489		No text annotation
IL_9SYR_1291/L1/4495:4497,
1/L1/4503:4505		No text annotation
IL_9SYR_1301/L1/4537:4538,
1/L1/4547:4549		No text annotation
IL_9SYR_1311/L1/4580:4582,
1/L1/4721:4723		No text annotation
IL_9SYR_1321/L1/4582:4585,
1/L1/4717:4721		No text annotation
IL_9SYR_1331/L1/4590:4592,
1/L1/4618:4620		No text annotation
IL_9SYR_1341/L1/4596:4603,
1/L1/4608:4614		No text annotation
IL_9SYR_1351/L1/4624:4629,
1/L1/4669:4673		No text annotation
IL_9SYR_1361/L1/4632:4637,
1/L1/4662:4666		No text annotation
IL_9SYR_1371/L1/4638:4640,
1/L1/4659:4661		No text annotation
IL_9SYR_1381/L1/4641:4642,
1/L1/4655:4658		No text annotation
IL_9SYR_1391/L1/4680:4685,
1/L1/4705:4710		No text annotation
IL_9SYR_1401/L1/4739:4742,
1/L1/4958:4960		No text annotation
IL_9SYR_1411/L1/4743:4746,
1/L1/4954:4957		No text annotation
IL_9SYR_1421/L1/4749:4751,
1/L1/4948:4951		No text annotation
IL_9SYR_1431/L1/4756:4765,
1/L1/4869:4877		No text annotation
IL_9SYR_1441/L1/4885:4889,
1/L1/4930:4934		No text annotation
IL_9SYR_1451/L1/4891:4896,
1/L1/4924:4928		No text annotation
IL_9SYR_1471/L1/4972:4975,
1/L1/4983:4986		No text annotation
IL_9SYR_1481/L1/4992:4994,
1/L1/5057:5059		No text annotation
IL_9SYR_1491/L1/4996:4997,
1/L1/5053:5055		No text annotation
IL_9SYR_1501/L1/5000:5002,
1/L1/5045:5050		No text annotation
IL_9SYR_1511/L1/5003:5009,
1/L1/5039:5044		No text annotation
IL_9SYR_1521/L1/5012:5014,
1/L1/5035:5036		No text annotation
IL_9SYR_1531/L1/5014:5017,
1/L1/5032:5035		No text annotation
IL_9SYR_1541/L2/15:16,
1/L2/62:64		No text annotation
geometric
IL_8QYX_165
IL_05642.2
IL_9SYR_1551/L2/21:27,
1/L2/52:57		No text annotation
geometric
IL_8QYX_166
IL_41504.1
IL_9SYR_1561/L2/28:29,
1/L2/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.2
IL_9SYR_1571/L2/32:36,
1/L2/41:45		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_9SYR_1581/L2/71:78,
1/L2/98:104		No text annotation
geometric
IL_8QYX_169
IL_62167.3
IL_9SYR_1591/L2/79:81,
1/L2/95:97		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.3
IL_9SYR_1601/L2/82:85,
1/L2/92:94		No text annotation
geometric
IL_8QYX_171
IL_01003.3
IL_9SYR_1611/L3/64:66,
1/L3/92:95		No text annotation
IL_9SYR_1621/S1/23:25,
1/S1/649:651		No text annotation
IL_9SYR_1631/S1/34:36,
1/S1/519:521		No text annotation
IL_9SYR_1641/S1/37:40,
1/S1/514:518		No text annotation
IL_9SYR_1651/S1/41:47,
1/S1/479:481		No text annotation
IL_9SYR_1661/S1/49:51,
1/S1/476:477		No text annotation
IL_9SYR_1671/S1/57:62,
1/S1/86:88		No text annotation
IL_9SYR_1681/S1/63:68,
1/S1/81:85		No text annotation
IL_9SYR_1691/S1/108:110,
1/S1/351:353		No text annotation
IL_9SYR_1701/S1/110:112,
1/S1/349:351		No text annotation
IL_9SYR_1711/S1/112:115,
1/S1/348:349		No text annotation
IL_9SYR_1721/S1/116:121,
1/S1/343:347		No text annotation
IL_9SYR_1731/S1/145:151,
1/S1/167:174		No text annotation
IL_9SYR_1741/S1/152:154,
1/S1/164:166		No text annotation
IL_9SYR_1751/S1/188:192,
1/S1/207:211		No text annotation
IL_9SYR_1761/S1/216:219,
1/S1/302:309		No text annotation
IL_9SYR_1771/S1/312:314,
1/S1/336:337		No text annotation
IL_9SYR_1781/S1/317:320,
1/S1/331:333		No text annotation
IL_9SYR_1801/S1/359:364,
1/S1/396:403		No text annotation
IL_9SYR_1811/S1/366:371,
1/S1/393:394		No text annotation
IL_9SYR_1821/S1/411:413,
1/S1/424:429		No text annotation
IL_9SYR_1831/S1/437:439,
1/S1/454:456		No text annotation
IL_9SYR_1841/S1/459:461,
1/S1/468:470		No text annotation
IL_9SYR_1851/S1/491:495,
1/S1/508:509		No text annotation
IL_9SYR_1861/S1/495:496,
1/S1/506:508		No text annotation
IL_9SYR_1871/S1/529:530,
1/S1/554:556		No text annotation
IL_9SYR_1891/S1/563:565,
1/S1/585:592		No text annotation
IL_9SYR_1901/S1/566:569,
1/S1/581:584		No text annotation
IL_9SYR_1911/S1/599:606,
1/S1/636:637		No text annotation
IL_9SYR_1921/S1/606:608,
1/S1/635:636		No text annotation
IL_9SYR_1931/S1/611:617,
1/S1/624:632		No text annotation
IL_9SYR_1941/S1/663:665,
1/S1/1162:1164		No text annotation
IL_9SYR_1951/S1/665:671,
1/S1/1161:1162		No text annotation
IL_9SYR_1961/S1/673:675,
1/S1/1030:1032		No text annotation
IL_9SYR_1971/S1/676:680,
1/S1/1025:1029		No text annotation
IL_9SYR_2031/S1/802:803,
1/S1/860:863		No text annotation
IL_9SYR_2041/S1/805:807,
1/S1/856:858		No text annotation
IL_9SYR_2051/S1/807:815,
1/S1/849:856		No text annotation
IL_9SYR_2061/S1/874:876,
1/S1/910:912		No text annotation
IL_9SYR_2071/S1/877:879,
1/S1/907:909		No text annotation
IL_9SYR_2081/S1/922:923,
1/S1/1019:1022		No text annotation
IL_9SYR_2091/S1/925:927,
1/S1/1014:1017		No text annotation
IL_9SYR_2101/S1/928:931,
1/S1/1010:1013		No text annotation
IL_9SYR_2111/S1/931:935,
1/S1/1007:1010		No text annotation
IL_9SYR_2121/S1/942:945,
1/S1/981:984		No text annotation
IL_9SYR_2131/S1/952:956,
1/S1/967:974		No text annotation
IL_9SYR_2141/S1/1042:1047,
1/S1/1071:1073		No text annotation
IL_9SYR_2151/S1/1047:1051,
1/S1/1067:1071		No text annotation
IL_9SYR_2161/S1/1091:1093,
1/S1/1152:1158		No text annotation
IL_9SYR_2171/S1/1098:1101,
1/S1/1131:1134		No text annotation
IL_9SYR_2181/S1/1101:1103,
1/S1/1129:1131		No text annotation
IL_9SYR_2191/S1/1108:1110,
1/S1/1123:1124		No text annotation
IL_9SYR_2201/S1/1168:1175,
1/S1/1186:1191		No text annotation
IL_9SYR_2211/S1/1203:1204,
1/S1/1694:1696		No text annotation
IL_9SYR_2221/S1/1206:1208,
1/S1/1691:1692		No text annotation
IL_9SYR_2231/S1/1213:1217,
1/S1/1681:1686		No text annotation
IL_9SYR_2241/S1/1230:1232,
1/S1/1526:1528		No text annotation
IL_9SYR_2251/S1/1235:1236,
1/S1/1521:1523		No text annotation
IL_9SYR_2261/S1/1270:1272,
1/S1/1510:1512		No text annotation
IL_9SYR_2271/S1/1281:1287,
1/S1/1314:1316		No text annotation
IL_9SYR_2281/S1/1281:1290,
1/S1/1309:1316		No text annotation
IL_9SYR_2291/S1/1287:1290,
1/S1/1309:1314		No text annotation
IL_9SYR_2301/S1/1291:1293,
1/S1/1306:1308		No text annotation
IL_9SYR_2311/S1/1325:1327,
1/S1/1502:1503		No text annotation
IL_9SYR_2321/S1/1329:1335,
1/S1/1492:1500		No text annotation
IL_9SYR_2331/S1/1337:1338,
1/S1/1488:1490		No text annotation
IL_9SYR_2341/S1/1347:1349,
1/S1/1380:1382		No text annotation
IL_9SYR_2351/S1/1363:1365,
1/S1/1374:1375		No text annotation
IL_9SYR_2361/S1/1395:1399,
1/S1/1447:1450		No text annotation
IL_9SYR_2371/S1/1402:1405,
1/S1/1441:1444		No text annotation
IL_9SYR_2381/S1/1408:1409,
1/S1/1432:1438		No text annotation
IL_9SYR_2401/S1/1412:1413,
1/S1/1427:1429		No text annotation
IL_9SYR_2411/S1/1416:1417,
1/S1/1422:1424		No text annotation
IL_9SYR_2421/S1/1537:1539,
1/S1/1594:1596		No text annotation
IL_9SYR_2431/S1/1541:1550,
1/S1/1582:1592		No text annotation
IL_9SYR_2441/S1/1550:1558,
1/S1/1577:1582		No text annotation
IL_9SYR_2451/S1/1560:1562,
1/S1/1573:1575		No text annotation
IL_9SYR_2461/S1/1604:1610,
1/S1/1629:1635		No text annotation
IL_9SYR_2471/S1/1700:1702,
1/S1/1833:1836		No text annotation
IL_9SYR_2481/S1/1702:1705,
1/S1/1829:1833		No text annotation
IL_9SYR_2491/S1/1706:1708,
1/S1/1826:1828		No text annotation
IL_9SYR_2501/S1/1708:1711,
1/S1/1822:1826		No text annotation
IL_9SYR_2511/S1/1714:1716,
1/S1/1817:1819		No text annotation
IL_9SYR_2521/S1/1717:1720,
1/S1/1813:1816		No text annotation
IL_9SYR_2531/S1/1720:1722,
1/S1/1812:1813		No text annotation
IL_9SYR_2541/S1/1729:1731,
1/S1/1803:1805		No text annotation
IL_9SYR_2551/S1/1733:1736,
1/S1/1798:1801		No text annotation
IL_9SYR_2561/S1/1739:1741,
1/S1/1793:1795		No text annotation
IL_9SYR_2571/S1/1742:1746,
1/S1/1788:1792		No text annotation

Problematic loops

#loop idProblemSequence
IL_9SYR_025No text annotation
IL_9SYR_026No text annotation
IL_9SYR_038No text annotation
IL_9SYR_065No text annotation
IL_9SYR_082No text annotation
IL_9SYR_146No text annotation
IL_9SYR_179No text annotation
IL_9SYR_188No text annotation
IL_9SYR_198No text annotation
IL_9SYR_199No text annotation
IL_9SYR_200No text annotation
IL_9SYR_201No text annotation
IL_9SYR_202No text annotation
IL_9SYR_239No text annotation
IL_9SYR_258No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9SYR_0011/L1/112:116,
1/L1/155:160,
1/L1/275:278		No text annotation
J3_9SYR_0021/L1/351:367,
1/L1/374:379,
1/L3/21:24		No text annotation
J3_9SYR_0031/L1/380:387,
1/L1/414:415,
1/L3/19:20		No text annotation
J3_9SYR_0041/L1/380:390,
1/L1/401:415,
1/L3/19:20		No text annotation
J3_9SYR_0051/L1/451:455,
1/L1/701:705,
1/L1/1292:1296		No text annotation
J3_9SYR_0061/L1/1531:1537,
1/L1/1622:1624,
1/L1/1640:1643		No text annotation
J3_9SYR_0071/L1/1546:1548,
1/L1/1580:1584,
1/L1/1609:1612		No text annotation
J3_9SYR_0081/L1/1726:1727,
1/L1/1802:1806,
1/L1/1832:1837		No text annotation
J3_9SYR_0091/L1/2393:2399,
1/L1/2805:2807,
1/L1/2819:2822		No text annotation
J3_9SYR_0101/L1/2402:2405,
1/L1/2785:2791,
1/L1/2800:2802		No text annotation
J3_9SYR_0111/L1/2440:2445,
1/L1/2515:2519,
1/L1/2536:2537		No text annotation
J3_9SYR_0121/L1/2451:2456,
1/L1/2465:2476,
1/L1/2501:2508		No text annotation
J3_9SYR_0131/L1/2551:2555,
1/L1/2572:2575,
1/L1/2757:2767		No text annotation
J3_9SYR_0141/L1/2575:2576,
1/L1/2585:2589,
1/L1/2756:2757		No text annotation
J3_9SYR_0151/L1/2598:2602,
1/L1/2737:2738,
1/L1/2742:2747		No text annotation
J3_9SYR_0161/L1/3937:3939,
1/L1/4074:4078,
1/L1/4168:4173		No text annotation
J3_9SYR_0171/L1/4228:4230,
1/L1/4331:4342,
1/L1/4370:4375		No text annotation
J3_9SYR_0181/L1/4241:4243,
1/L1/4267:4269,
1/L1/4278:4283		No text annotation
J3_9SYR_0191/L1/4463:4466,
1/L1/4491:4493,
1/L1/4507:4513		No text annotation
J3_9SYR_0201/L1/4751:4754,
1/L1/4879:4883,
1/L1/4936:4948		No text annotation
J3_9SYR_0211/L2/9:14,
1/L2/65:66,
1/L2/109:110		No text annotation
geometric
J3_8QYX_024
J3_26985.1
J3_9SYR_0221/L3/44:45,
1/L3/58:64,
1/L3/95:99		No text annotation
J3_9SYR_0231/S1/40:41,
1/S1/481:489,
1/S1/511:514		No text annotation
J3_9SYR_0241/S1/223:238,
1/S1/280:288,
1/S1/295:298		No text annotation
J3_9SYR_0251/S1/682:685,
1/S1/917:922,
1/S1/1022:1023		No text annotation
J3_9SYR_0261/S1/682:685,
1/S1/917:923,
1/S1/1019:1023		No text annotation
J3_9SYR_0271/S1/816:819,
1/S1/829:831,
1/S1/843:848		No text annotation
J3_9SYR_0281/S1/938:941,
1/S1/985:993,
1/S1/1000:1004		No text annotation
J3_9SYR_0291/S1/1094:1096,
1/S1/1136:1140,
1/S1/1147:1151		No text annotation
J3_9SYR_0301/S1/1218:1221,
1/S1/1645:1651,
1/S1/1673:1680		No text annotation
J3_9SYR_0311/S1/1225:1228,
1/S1/1530:1532,
1/S1/1638:1641		No text annotation
J3_9SYR_0321/S1/1237:1244,
1/S1/1255:1266,
1/S1/1516:1520		No text annotation
J3_9SYR_0331/S1/1272:1277,
1/S1/1320:1324,
1/S1/1504:1510		No text annotation
J3_9SYR_0341/S1/1340:1345,
1/S1/1384:1389,
1/S1/1481:1486		No text annotation
J3_9SYR_0351/S1/1350:1351,
1/S1/1360:1363,
1/S1/1375:1379		No text annotation
J3_9SYR_0361/S1/1391:1395,
1/S1/1450:1456,
1/S1/1470:1479		No text annotation
J3_9SYR_0371/S1/1532:1536,
1/S1/1597:1604,
1/S1/1635:1638		No text annotation
J4_9SYR_0011/L1/111:112,
1/L1/278:283,
1/L1/304:310,
1/L1/327:330		No text annotation
J4_9SYR_0021/L1/196:199,
1/L1/215:222,
1/L1/226:228,
1/L1/240:244		No text annotation
J4_9SYR_0031/L1/981:983,
1/L1/1070:1072,
1/L1/1240:1243,
1/L1/1268:1273		No text annotation
J4_9SYR_0041/L1/2365:2371,
1/L1/2389:2391,
1/L1/2824:2829,
1/L1/3856:3857		No text annotation
J4_9SYR_0051/L1/2406:2410,
1/L1/2434:2439,
1/L1/2538:2539,
1/L1/2777:2784		No text annotation
J4_9SYR_0061/L1/2409:2410,
1/L1/2434:2439,
1/L1/2538:2539,
1/L1/2777:2783		No text annotation
J4_9SYR_0071/L1/2451:2456,
1/L1/2465:2469,
1/L1/2471:2476,
1/L1/2501:2508		No text annotation
J4_9SYR_0081/L1/2618:2619,
1/L1/2637:2642,
1/L1/2692:2698,
1/L1/2718:2719		No text annotation
J4_9SYR_0091/L1/3634:3638,
1/L1/3650:3654,
1/L1/3690:3694,
1/L1/3821:3826		No text annotation
J4_9SYR_0101/L1/3696:3698,
1/L1/3752:3753,
1/L1/3771:3780,
1/L1/3814:3819		No text annotation
J4_9SYR_0111/L1/4231:4235,
1/L1/4289:4291,
1/L1/4318:4319,
1/L1/4328:4330		No text annotation
J4_9SYR_0121/L1/4587:4590,
1/L1/4620:4621,
1/L1/4676:4678,
1/L1/4712:4715		No text annotation
J4_9SYR_0131/S1/98:106,
1/S1/355:357,
1/S1/405:409,
1/S1/431:432		No text annotation
J4_9SYR_0141/S1/671:673,
1/S1/1032:1037,
1/S1/1078:1089,
1/S1/1160:1161		No text annotation
J4_9SYR_0151/S3/7:10,
1/S3/25:27,
1/S3/43:49,
1/S3/65:66		tRNA junction
homologous
J4_6CFJ_015
J4_95067.1
J5_9SYR_0011/L1/19:21,
1/L3/35:42,
1/L3/101:106,
1/L3/113:114,
1/L3/136:138		No text annotation
J5_9SYR_0021/L1/1335:1340,
1/L1/1516:1519,
1/L1/1658:1661,
1/L1/2288:2290,
1/L1/2345:2351		No text annotation
J5_9SYR_0031/L1/2855:2863,
1/L1/2887:2888,
1/L1/3613:3614,
1/L1/3618:3626,
1/L1/3835:3837		No text annotation
J5_9SYR_0041/L1/3903:3910,
1/L1/4392:4400,
1/L1/4444:4453,
1/L1/4528:4534,
1/L1/4552:4557		No text annotation
J5_9SYR_0051/L1/3920:3923,
1/L1/4188:4191,
1/L1/4204:4205,
1/L1/4227:4228,
1/L1/4375:4381		No text annotation
J5_9SYR_0061/S1/30:34,
1/S1/521:527,
1/S1/558:563,
1/S1/592:595,
1/S1/641:644		No text annotation
J5_9SYR_0071/S1/30:34,
1/S1/521:527,
1/S1/558:565,
1/S1/585:595,
1/S1/641:644		No text annotation
J5_9SYR_0081/S1/53:56,
1/S1/89:96,
1/S1/434:436,
1/S1/457:459,
1/S1/470:474		No text annotation
J5_9SYR_0091/S1/123:129,
1/S1/183:185,
1/S1/214:215,
1/S1/310:312,
1/S1/337:341		No text annotation
J6_9SYR_0011/L1/21:26,
1/L1/57:67,
1/L1/74:78,
1/L1/105:109,
1/L1/332:339,
1/L3/33:35		No text annotation
J6_9SYR_0021/L1/1352:1355,
1/L1/1384:1388,
1/L1/1395:1399,
1/L1/1418:1421,
1/L1/1464:1466,
1/L1/1499:1504		No text annotation
J6_9SYR_0031/L1/3920:3923,
1/L1/4188:4191,
1/L1/4204:4205,
1/L1/4227:4230,
1/L1/4331:4342,
1/L1/4370:4381		No text annotation
J7_9SYR_0011/L1/1666:1671,
1/L1/1684:1685,
1/L1/1852:1855,
1/L1/1879:1884,
1/L1/1895:1899,
1/L1/2077:2078,
1/L1/2278:2283		No text annotation

Problematic loops

No problematic loops


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