9SYR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9SYR_001 | 1/L1/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9SYR_002 | 1/L1/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9SYR_003 | 1/L1/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.5 | |
| HL_9SYR_005 | 1/L1/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.6 | |
| HL_9SYR_006 | 1/L1/222:226 | No text annotation | homologous HL_8GLP_006 HL_75660.11 | |
| HL_9SYR_007 | 1/L1/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_9SYR_008 | 1/L1/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.5 | |
| HL_9SYR_009 | 1/L1/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_9SYR_010 | 1/L1/368:373 | No text annotation | homologous HL_9AXU_010 HL_34789.7 | |
| HL_9SYR_011 | 1/L1/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9SYR_012 | 1/L1/1178:1183 | No text annotation | homologous HL_8GLP_014 HL_12626.2 | |
| HL_9SYR_013 | 1/L1/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9SYR_014 | 1/L1/1364:1373 | No text annotation | homologous HL_8GLP_120 NA | |
| HL_9SYR_015 | 1/L1/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.7 | |
| HL_9SYR_016 | 1/L1/1436:1448 | No text annotation | homologous HL_8GLP_020 HL_20751.3 | |
| HL_9SYR_017 | 1/L1/1480:1484 | No text annotation | homologous HL_8GLP_021 HL_12111.1 | |
| HL_9SYR_018 | 1/L1/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9SYR_019 | 1/L1/1593:1602 | No text annotation | homologous HL_9PN5_020 HL_50204.4 | |
| HL_9SYR_020 | 1/L1/1627:1635 | No text annotation | homologous HL_9PN5_021 HL_28253.2 | |
| HL_9SYR_021 | 1/L1/1675:1680 | No text annotation | homologous HL_9AXU_020 HL_27530.4 | |
| HL_9SYR_022 | 1/L1/1816:1823 | No text annotation | homologous HL_9PN5_023 HL_63894.5 | |
| HL_9SYR_023 | 1/L1/1864:1870 | No text annotation | homologous HL_8GLP_028 HL_34789.7 | |
| HL_9SYR_024 | 1/L1/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9SYR_025 | 1/L1/2257:2261 | No text annotation | homologous HL_8GLP_031 HL_12111.1 | |
| HL_9SYR_026 | 1/L1/2317:2322 | No text annotation | homologous HL_9AXU_027 HL_34789.7 | |
| HL_9SYR_027 | 1/L1/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.8 | |
| HL_9SYR_028 | 1/L1/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9SYR_029 | 1/L1/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9SYR_030 | 1/L1/2469:2471 | No text annotation | homologous HL_8GLP_036 NA | |
| HL_9SYR_031 | 1/L1/2523:2532 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9SYR_033 | 1/L1/2578:2583 | No text annotation | homologous HL_9PN5_035 HL_34789.7 | |
| HL_9SYR_034 | 1/L1/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9SYR_035 | 1/L1/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_9SYR_036 | 1/L1/2738:2742 | No text annotation | homologous HL_8GLP_044 HL_90436.6 | |
| HL_9SYR_037 | 1/L1/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.5 | |
| HL_9SYR_038 | 1/L1/2810:2816 | No text annotation | homologous HL_8GLP_046 HL_34789.7 | |
| HL_9SYR_039 | 1/L1/2872:2877 | No text annotation | homologous HL_9PN5_042 HL_61337.7 | |
| HL_9SYR_040 | 1/L1/3614:3618 | No text annotation | homologous HL_9PN5_043 HL_17051.1 | |
| HL_9SYR_041 | 1/L1/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_9SYR_042 | 1/L1/3668:3674 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_9SYR_043 | 1/L1/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9SYR_044 | 1/L1/3757:3767 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9SYR_045 | 1/L1/3796:3804 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9SYR_046 | 1/L1/3873:3882 | No text annotation | homologous HL_8GLP_055 HL_78372.4 | |
| HL_9SYR_047 | 1/L1/4193:4201 | No text annotation | homologous HL_9H3G_055 HL_11974.5 | |
| HL_9SYR_048 | 1/L1/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_9SYR_049 | 1/L1/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9SYR_050 | 1/L1/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.5 | |
| HL_9SYR_051 | 1/L1/4301:4309 | No text annotation | homologous HL_8GLP_063 HL_15296.4 | |
| HL_9SYR_052 | 1/L1/4321:4326 | No text annotation | homologous HL_8GLP_064 HL_34789.7 | |
| HL_9SYR_053 | 1/L1/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9SYR_054 | 1/L1/4417:4425 | No text annotation | homologous HL_9PN5_059 HL_52011.4 | |
| HL_9SYR_055 | 1/L1/4474:4481 | No text annotation | homologous HL_9PN5_060 HL_02262.2 | |
| HL_9SYR_056 | 1/L1/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9SYR_057 | 1/L1/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9SYR_058 | 1/L1/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9SYR_059 | 1/L1/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9SYR_060 | 1/L1/4688:4702 | No text annotation | homologous HL_9H3G_068 HL_53269.5 | |
| HL_9SYR_061 | 1/L1/4907:4914 | No text annotation | homologous HL_8GLP_074 HL_31089.4 | |
| HL_9SYR_062 | 1/L1/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_9SYR_063 | 1/L2/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_9SYR_064 | 1/L2/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_9SYR_065 | 1/L2/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9SYR_066 | 1/L3/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_9SYR_067 | 1/L3/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.2 | |
| HL_9SYR_068 | 1/S1/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.4 | |
| HL_9SYR_069 | 1/S1/69:80 | No text annotation | ||
| HL_9SYR_070 | 1/S1/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9SYR_072 | 1/S1/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9SYR_074 | 1/S1/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_9SYR_075 | 1/S1/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9SYR_076 | 1/S1/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9SYR_077 | 1/S1/462:467 | No text annotation | homologous HL_9H3G_087 HL_61337.7 | |
| HL_9SYR_078 | 1/S1/498:504 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9SYR_080 | 1/S1/569:581 | No text annotation | homologous HL_9H3G_089 HL_68749.4 | |
| HL_9SYR_081 | 1/S1/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9SYR_082 | 1/S1/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9SYR_083 | 1/S1/833:841 | No text annotation | ||
| HL_9SYR_085 | 1/S1/957:966 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9SYR_086 | 1/S1/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.7 | |
| HL_9SYR_087 | 1/S1/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9SYR_088 | 1/S1/1114:1119 | No text annotation | geometric HL_8GLP_105 HL_12125.5 | |
| HL_9SYR_089 | 1/S1/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9SYR_090 | 1/S1/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9SYR_091 | 1/S1/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_9SYR_092 | 1/S1/1295:1304 | No text annotation | homologous HL_9PN5_102 HL_98423.6 | |
| HL_9SYR_093 | 1/S1/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9SYR_094 | 1/S1/1366:1373 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9SYR_095 | 1/S1/1417:1422 | No text annotation | geometric HL_2ZUE_002 HL_56131.4 | |
| HL_9SYR_096 | 1/S1/1460:1466 | No text annotation | geometric HL_8GLP_113 HL_76371.5 | |
| HL_9SYR_097 | 1/S1/1565:1570 | No text annotation | homologous HL_9H3G_105 HL_34789.7 | |
| HL_9SYR_098 | 1/S1/1614:1625 | No text annotation | homologous HL_9PN5_108 HL_50951.4 | |
| HL_9SYR_099 | 1/S1/1658:1666 | No text annotation | homologous HL_9H3G_107 HL_25307.3 | |
| HL_9SYR_101 | 1/S1/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_9SYR_102 | 1/S3/30:40 | No text annotation | homologous HL_5IB8_208 HL_14063.2 | |
| HL_9SYR_103 | 1/S3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_33597.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9SYR_004 | No text annotation | ||
| HL_9SYR_032 | No text annotation | ||
| HL_9SYR_071 | GNRA | ||
| HL_9SYR_073 | No text annotation | ||
| HL_9SYR_079 | No text annotation | ||
| HL_9SYR_084 | No text annotation | ||
| HL_9SYR_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9SYR_001 | 1/L1/6:7, 1/L3/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.6 | |
| IL_9SYR_002 | 1/L1/12:14, 1/L3/143:144 | Single bulged U | homologous IL_9PN5_002 IL_97561.8 | |
| IL_9SYR_003 | 1/L1/16:18, 1/L3/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_9SYR_004 | 1/L1/26:27, 1/L1/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.6 | |
| IL_9SYR_005 | 1/L1/30:37, 1/L1/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_9SYR_006 | 1/L1/81:88, 1/L1/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.6 | |
| IL_9SYR_007 | 1/L1/118:121, 1/L1/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_9SYR_008 | 1/L1/118:122, 1/L1/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_9SYR_009 | 1/L1/121:122, 1/L1/147:152 | No text annotation | homologous IL_8GLP_008 IL_10396.4 | |
| IL_9SYR_010 | 1/L1/125:126, 1/L1/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.6 | |
| IL_9SYR_011 | 1/L1/168:173, 1/L1/263:267 | No text annotation | ||
| IL_9SYR_012 | 1/L1/195:196, 1/L1/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.6 | |
| IL_9SYR_013 | 1/L1/199:201, 1/L1/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_9SYR_014 | 1/L1/339:342, 1/L3/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_9SYR_015 | 1/L1/348:350, 1/L3/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_9SYR_016 | 1/L1/387:390, 1/L1/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.4 | |
| IL_9SYR_017 | 1/L1/415:421, 1/L3/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_9SYR_018 | 1/L1/443:446, 1/L1/1300:1304 | No text annotation | ||
| IL_9SYR_019 | 1/L1/448:450, 1/L1/1297:1298 | Single bulged C | geometric IL_3DIL_001 IL_05642.6 | |
| IL_9SYR_020 | 1/L1/459:460, 1/L1/695:697 | Single bulged C | homologous IL_8GLP_024 IL_05642.6 | |
| IL_9SYR_021 | 1/L1/462:464, 1/L1/691:693 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.7 | |
| IL_9SYR_022 | 1/L1/466:472, 1/L1/682:689 | No text annotation | homologous IL_8GLP_026 NA | |
| IL_9SYR_023 | 1/L1/480:482, 1/L1/672:674 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.5 | |
| IL_9SYR_024 | 1/L1/482:485, 1/L1/671:672 | No text annotation | homologous IL_8GLP_027 IL_71421.6 | |
| IL_9SYR_027 | 1/L1/508:510, 1/L1/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.5 | |
| IL_9SYR_028 | 1/L1/709:710, 1/L1/1286:1288 | Single bulged G | homologous IL_8GLP_034 IL_28408.5 | |
| IL_9SYR_029 | 1/L1/723:724, 1/L1/942:945 | No text annotation | homologous IL_8GLP_035 IL_09092.2 | |
| IL_9SYR_030 | 1/L1/727:731, 1/L1/938:939 | No text annotation | homologous IL_8GLP_036 IL_75501.2 | |
| IL_9SYR_031 | 1/L1/732:735, 1/L1/928:937 | No text annotation | homologous IL_8GLP_037 NA | |
| IL_9SYR_032 | 1/L1/735:739, 1/L1/925:928 | No text annotation | ||
| IL_9SYR_033 | 1/L1/740:742, 1/L1/922:924 | Isolated non-canonical cWW pair | homologous IL_8GLP_039 IL_01003.7 | |
| IL_9SYR_034 | 1/L1/745:752, 1/L1/911:919 | No text annotation | homologous IL_8GLP_040 IL_25001.3 | |
| IL_9SYR_035 | 1/L1/1073:1074, 1/L1/1237:1239 | Single bulged A | homologous IL_8GLP_041 IL_14190.5 | |
| IL_9SYR_036 | 1/L1/1082:1084, 1/L1/1213:1217 | No text annotation | homologous IL_8GLP_043 IL_84227.2 | |
| IL_9SYR_037 | 1/L1/1086:1087, 1/L1/1209:1211 | Single bulged C | homologous IL_8GLP_044 IL_05642.6 | |
| IL_9SYR_039 | 1/L1/1173:1175, 1/L1/1186:1188 | Isolated cWH basepair | homologous IL_8GLP_047 IL_10892.5 | |
| IL_9SYR_040 | 1/L1/1244:1245, 1/L1/1265:1267 | Single bulged G | homologous IL_8GLP_048 IL_28408.5 | |
| IL_9SYR_041 | 1/L1/1357:1360, 1/L1/1379:1382 | No text annotation | ||
| IL_9SYR_042 | 1/L1/1357:1361, 1/L1/1376:1382 | No text annotation | homologous IL_8GLP_288 NA | |
| IL_9SYR_043 | 1/L1/1360:1361, 1/L1/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_9SYR_044 | 1/L1/1425:1429, 1/L1/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9SYR_045 | 1/L1/1431:1434, 1/L1/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.5 | |
| IL_9SYR_046 | 1/L1/1467:1468, 1/L1/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.5 | |
| IL_9SYR_047 | 1/L1/1474:1476, 1/L1/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.6 | |
| IL_9SYR_048 | 1/L1/1479:1480, 1/L1/1484:1486 | Single bulged C | homologous IL_8GLP_055 IL_05642.6 | |
| IL_9SYR_049 | 1/L1/1520:1522, 1/L1/1655:1657 | Isolated non-canonical cWW pair | homologous IL_9PN5_026 IL_01003.7 | |
| IL_9SYR_050 | 1/L1/1522:1526, 1/L1/1648:1655 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9SYR_051 | 1/L1/1545:1546, 1/L1/1612:1614 | Single bulged A | homologous IL_8GLP_057 IL_14190.5 | |
| IL_9SYR_052 | 1/L1/1550:1551, 1/L1/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.5 | |
| IL_9SYR_053 | 1/L1/1551:1555, 1/L1/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.5 | |
| IL_9SYR_054 | 1/L1/1586:1589, 1/L1/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9SYR_055 | 1/L1/1590:1592, 1/L1/1603:1604 | Single bulged U | homologous IL_9H3G_038 IL_97561.8 | |
| IL_9SYR_056 | 1/L1/1624:1626, 1/L1/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.4 | |
| IL_9SYR_057 | 1/L1/1671:1673, 1/L1/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9SYR_058 | 1/L1/1686:1688, 1/L1/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9SYR_059 | 1/L1/1723:1725, 1/L1/1838:1839 | Single bulged G | homologous IL_9H3G_043 IL_28408.5 | |
| IL_9SYR_060 | 1/L1/1732:1738, 1/L1/1790:1797 | No text annotation | homologous IL_8GLP_067 NA | |
| IL_9SYR_061 | 1/L1/1739:1744, 1/L1/1786:1789 | No text annotation | homologous IL_9PN5_039 IL_16301.4 | |
| IL_9SYR_062 | 1/L1/1746:1751, 1/L1/1779:1784 | No text annotation | homologous IL_9AXU_040 IL_02020.1 | |
| IL_9SYR_063 | 1/L1/1814:1816, 1/L1/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.5 | |
| IL_9SYR_064 | 1/L1/1858:1860, 1/L1/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9SYR_066 | 1/L1/1905:1909, 1/L1/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.4 | |
| IL_9SYR_067 | 1/L1/1911:1918, 1/L1/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.4 | |
| IL_9SYR_068 | 1/L1/1918:1920, 1/L1/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.5 | |
| IL_9SYR_069 | 1/L1/1920:1922, 1/L1/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.6 | |
| IL_9SYR_070 | 1/L1/1926:1933, 1/L1/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_9SYR_071 | 1/L1/1933:1944, 1/L1/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.4 | |
| IL_9SYR_072 | 1/L1/1946:1948, 1/L1/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9SYR_073 | 1/L1/2083:2085, 1/L1/2272:2273 | Single bulged C | homologous IL_8GLP_083 IL_05642.6 | |
| IL_9SYR_074 | 1/L1/2290:2292, 1/L1/2342:2345 | No text annotation | homologous IL_9H3G_061 IL_84227.2 | |
| IL_9SYR_075 | 1/L1/2299:2301, 1/L1/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_9SYR_076 | 1/L1/2302:2309, 1/L1/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_9SYR_077 | 1/L1/2312:2314, 1/L1/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_9SYR_078 | 1/L1/2358:2364, 1/L1/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9H3G_064 IL_02666.4 | |
| IL_9SYR_079 | 1/L1/2406:2409, 1/L1/2783:2784 | Major groove platform; stack outside cWW | geometric IL_8GLP_089 IL_74641.5 | |
| IL_9SYR_080 | 1/L1/2415:2419, 1/L1/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.4 | |
| IL_9SYR_081 | 1/L1/2446:2450, 1/L1/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_9SYR_083 | 1/L1/2549:2550, 1/L1/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_9SYR_084 | 1/L1/2589:2593, 1/L1/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.5 | |
| IL_9SYR_085 | 1/L1/2613:2614, 1/L1/2724:2726 | Single bulged A | homologous IL_8GLP_097 IL_14190.5 | |
| IL_9SYR_086 | 1/L1/2614:2615, 1/L1/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.6 | |
| IL_9SYR_087 | 1/L1/2646:2648, 1/L1/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_9SYR_088 | 1/L1/2651:2653, 1/L1/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_9SYR_089 | 1/L1/2656:2662, 1/L1/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_9SYR_090 | 1/L1/2704:2705, 1/L1/2710:2712 | Single bulged G | homologous IL_8GLP_102 IL_28408.5 | |
| IL_9SYR_091 | 1/L1/2832:2838, 1/L1/3850:3853 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9SYR_092 | 1/L1/2844:2846, 1/L1/3842:3844 | No text annotation | homologous IL_9H3G_084 IL_10432.4 | |
| IL_9SYR_093 | 1/L1/2847:2850, 1/L1/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8OI5_078 IL_74641.5 | |
| IL_9SYR_094 | 1/L1/2847:2855, 1/L1/3837:3841 | No text annotation | geometric IL_9PN5_075 IL_80252.4 | |
| IL_9SYR_095 | 1/L1/2850:2855, 1/L1/3837:3840 | No text annotation | homologous IL_9PN5_076 IL_28217.4 | |
| IL_9SYR_096 | 1/L1/2867:2872, 1/L1/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.4 | |
| IL_9SYR_097 | 1/L1/2889:2891, 1/L1/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.7 | |
| IL_9SYR_098 | 1/L1/2896:2897, 1/L1/3602:3605 | No text annotation | homologous IL_9PN5_079 IL_18824.4 | |
| IL_9SYR_099 | 1/L1/3632:3633, 1/L1/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9SYR_100 | 1/L1/3660:3665, 1/L1/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_9SYR_101 | 1/L1/3700:3703, 1/L1/3749:3750 | No text annotation | homologous IL_8GLP_116 IL_55206.4 | |
| IL_9SYR_102 | 1/L1/3704:3705, 1/L1/3745:3748 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9SYR_103 | 1/L1/3708:3714, 1/L1/3739:3742 | No text annotation | ||
| IL_9SYR_104 | 1/L1/3715:3721, 1/L1/3732:3738 | No text annotation | homologous IL_9PN5_085 IL_65359.4 | |
| IL_9SYR_105 | 1/L1/3780:3781, 1/L1/3811:3814 | No text annotation | geometric IL_9PN5_086 IL_24886.5 | |
| IL_9SYR_106 | 1/L1/3781:3792, 1/L1/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.4 | |
| IL_9SYR_107 | 1/L1/3895:3898, 1/L1/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9SYR_108 | 1/L1/3900:3902, 1/L1/4558:4561 | No text annotation | homologous IL_9PN5_089 IL_80025.4 | |
| IL_9SYR_109 | 1/L1/3913:3915, 1/L1/4388:4389 | Single bulged U | homologous IL_8GLP_130 IL_97561.8 | |
| IL_9SYR_110 | 1/L1/3916:3917, 1/L1/4384:4387 | Minor groove platform | homologous IL_8GLP_131 IL_37129.1 | |
| IL_9SYR_111 | 1/L1/3927:3929, 1/L1/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9SYR_112 | 1/L1/4082:4088, 1/L1/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_9SYR_113 | 1/L1/4191:4192, 1/L1/4202:4204 | AG tHS outside loop | homologous IL_9PN5_094 IL_14190.5 | |
| IL_9SYR_114 | 1/L1/4243:4245, 1/L1/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9SYR_115 | 1/L1/4291:4293, 1/L1/4317:4318 | Single bulged A | homologous IL_9AXU_093 IL_14190.5 | |
| IL_9SYR_116 | 1/L1/4295:4298, 1/L1/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_9SYR_117 | 1/L1/4347:4350, 1/L1/4364:4365 | No text annotation | homologous IL_9H3G_115 IL_57267.1 | |
| IL_9SYR_118 | 1/L1/4400:4401, 1/L1/4442:4444 | Major groove platform | homologous IL_9H3G_116 IL_48076.11 | |
| IL_9SYR_119 | 1/L1/4401:4403, 1/L1/4440:4442 | Isolated non-canonical cWW pair | homologous IL_9H3G_117 IL_01003.7 | |
| IL_9SYR_120 | 1/L1/4403:4405, 1/L1/4439:4440 | No text annotation | homologous IL_9PN5_099 IL_46637.5 | |
| IL_9SYR_121 | 1/L1/4405:4407, 1/L1/4435:4439 | No text annotation | homologous IL_9H3G_119 IL_36931.5 | |
| IL_9SYR_122 | 1/L1/4412:4416, 1/L1/4426:4430 | No text annotation | homologous IL_9PN5_101 IL_87767.5 | |
| IL_9SYR_123 | 1/L1/4453:4454, 1/L1/4526:4528 | No text annotation | homologous IL_9PN5_102 IL_46637.5 | |
| IL_9SYR_124 | 1/L1/4456:4458, 1/L1/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9SYR_125 | 1/L1/4458:4459, 1/L1/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.5 | |
| IL_9SYR_126 | 1/L1/4466:4468, 1/L1/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9SYR_127 | 1/L1/4466:4470, 1/L1/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9SYR_128 | 1/L1/4468:4470, 1/L1/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9SYR_129 | 1/L1/4495:4497, 1/L1/4503:4505 | Isolated non-canonical cWW pair | homologous IL_9PN5_108 IL_01003.7 | |
| IL_9SYR_130 | 1/L1/4537:4538, 1/L1/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.5 | |
| IL_9SYR_131 | 1/L1/4580:4582, 1/L1/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_9SYR_132 | 1/L1/4582:4585, 1/L1/4717:4721 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9SYR_133 | 1/L1/4590:4592, 1/L1/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_9SYR_134 | 1/L1/4596:4603, 1/L1/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9SYR_135 | 1/L1/4624:4629, 1/L1/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_9SYR_136 | 1/L1/4632:4637, 1/L1/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9SYR_137 | 1/L1/4638:4640, 1/L1/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.5 | |
| IL_9SYR_138 | 1/L1/4641:4642, 1/L1/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_9SYR_139 | 1/L1/4680:4685, 1/L1/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9SYR_140 | 1/L1/4739:4742, 1/L1/4958:4960 | Isolated non-canonical cWW pair | homologous IL_9H3G_134 IL_19025.1 | |
| IL_9SYR_141 | 1/L1/4743:4746, 1/L1/4954:4957 | Tandem non-canonical cWW pairs | homologous IL_8GLP_166 IL_15225.5 | |
| IL_9SYR_142 | 1/L1/4749:4751, 1/L1/4948:4951 | No text annotation | homologous IL_8GLP_167 IL_31990.1 | |
| IL_9SYR_143 | 1/L1/4756:4765, 1/L1/4869:4877 | No text annotation | homologous IL_8GLP_168 NA | |
| IL_9SYR_144 | 1/L1/4885:4889, 1/L1/4930:4934 | No text annotation | homologous IL_8GLP_170 NA | |
| IL_9SYR_145 | 1/L1/4891:4896, 1/L1/4924:4928 | No text annotation | homologous IL_8GLP_171 NA | |
| IL_9SYR_147 | 1/L1/4972:4975, 1/L1/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9H3G_140 IL_71194.5 | |
| IL_9SYR_148 | 1/L1/4992:4994, 1/L1/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.7 | |
| IL_9SYR_149 | 1/L1/4996:4997, 1/L1/5053:5055 | Single bulged C | homologous IL_8GLP_174 IL_05642.6 | |
| IL_9SYR_150 | 1/L1/5000:5002, 1/L1/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_9SYR_151 | 1/L1/5003:5009, 1/L1/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9SYR_152 | 1/L1/5012:5014, 1/L1/5035:5036 | Single bulged C | homologous IL_9H3G_145 IL_05642.6 | |
| IL_9SYR_153 | 1/L1/5014:5017, 1/L1/5032:5035 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_9SYR_154 | 1/L2/15:16, 1/L2/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.6 | |
| IL_9SYR_155 | 1/L2/21:27, 1/L2/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9SYR_156 | 1/L2/28:29, 1/L2/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_9SYR_157 | 1/L2/32:36, 1/L2/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9SYR_158 | 1/L2/71:78, 1/L2/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.2 | |
| IL_9SYR_159 | 1/L2/79:81, 1/L2/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_9SYR_160 | 1/L2/82:85, 1/L2/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_9SYR_161 | 1/L3/64:66, 1/L3/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 | |
| IL_9SYR_162 | 1/S1/23:25, 1/S1/649:651 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9SYR_163 | 1/S1/34:36, 1/S1/519:521 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.7 | |
| IL_9SYR_164 | 1/S1/37:40, 1/S1/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.5 | |
| IL_9SYR_165 | 1/S1/41:47, 1/S1/479:481 | No text annotation | homologous IL_9H3G_158 IL_88082.5 | |
| IL_9SYR_166 | 1/S1/49:51, 1/S1/476:477 | Minor groove platform | homologous IL_9PN5_146 IL_26092.1 | |
| IL_9SYR_167 | 1/S1/57:62, 1/S1/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9SYR_168 | 1/S1/63:68, 1/S1/81:85 | No text annotation | homologous IL_9PN5_148 IL_21667.4 | |
| IL_9SYR_169 | 1/S1/108:110, 1/S1/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.6 | |
| IL_9SYR_170 | 1/S1/110:112, 1/S1/349:351 | Isolated non-canonical cWW pair | geometric IL_8GLP_197 IL_01003.7 | |
| IL_9SYR_171 | 1/S1/112:115, 1/S1/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.6 | |
| IL_9SYR_172 | 1/S1/116:121, 1/S1/343:347 | No text annotation | homologous IL_9PN5_151 IL_31545.4 | |
| IL_9SYR_173 | 1/S1/145:151, 1/S1/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9SYR_174 | 1/S1/152:154, 1/S1/164:166 | Isolated cWH basepair | homologous IL_9PN5_153 IL_10892.5 | |
| IL_9SYR_175 | 1/S1/188:192, 1/S1/207:211 | No text annotation | geometric IL_8GLP_204 IL_87767.5 | |
| IL_9SYR_176 | 1/S1/216:219, 1/S1/302:309 | No text annotation | ||
| IL_9SYR_177 | 1/S1/312:314, 1/S1/336:337 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_9SYR_178 | 1/S1/317:320, 1/S1/331:333 | No text annotation | homologous IL_9PN5_157 IL_77718.1 | |
| IL_9SYR_180 | 1/S1/359:364, 1/S1/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9SYR_181 | 1/S1/366:371, 1/S1/393:394 | No text annotation | homologous IL_9H3G_174 IL_01372.4 | |
| IL_9SYR_182 | 1/S1/411:413, 1/S1/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_9SYR_183 | 1/S1/437:439, 1/S1/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9SYR_184 | 1/S1/459:461, 1/S1/468:470 | Isolated non-canonical cWW pair | homologous IL_9H3G_177 IL_19025.1 | |
| IL_9SYR_185 | 1/S1/491:495, 1/S1/508:509 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9SYR_186 | 1/S1/495:496, 1/S1/506:508 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9SYR_187 | 1/S1/529:530, 1/S1/554:556 | Single bulged A | homologous IL_9H3G_181 IL_14190.5 | |
| IL_9SYR_189 | 1/S1/563:565, 1/S1/585:592 | No text annotation | homologous IL_9H3G_182 IL_02511.3 | |
| IL_9SYR_190 | 1/S1/566:569, 1/S1/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_001 IL_71194.5 | |
| IL_9SYR_191 | 1/S1/599:606, 1/S1/636:637 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9SYR_192 | 1/S1/606:608, 1/S1/635:636 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9SYR_193 | 1/S1/611:617, 1/S1/624:632 | Kink-turn related | homologous IL_9H3G_187 IL_52042.4 | |
| IL_9SYR_194 | 1/S1/663:665, 1/S1/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9SYR_195 | 1/S1/665:671, 1/S1/1161:1162 | No text annotation | homologous IL_9H3G_189 IL_20847.4 | |
| IL_9SYR_196 | 1/S1/673:675, 1/S1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9SYR_197 | 1/S1/676:680, 1/S1/1025:1029 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9SYR_203 | 1/S1/802:803, 1/S1/860:863 | No text annotation | homologous IL_9PN5_178 IL_73108.5 | |
| IL_9SYR_204 | 1/S1/805:807, 1/S1/856:858 | Isolated non-canonical cWW pair | homologous IL_9H3G_193 IL_71625.6 | |
| IL_9SYR_205 | 1/S1/807:815, 1/S1/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9SYR_206 | 1/S1/874:876, 1/S1/910:912 | Isolated non-canonical cWW pair | geometric IL_9H3G_105 IL_01003.7 | |
| IL_9SYR_207 | 1/S1/877:879, 1/S1/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_9SYR_208 | 1/S1/922:923, 1/S1/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_9SYR_209 | 1/S1/925:927, 1/S1/1014:1017 | Isolated non-canonical cWW pair | homologous IL_9PN5_183 IL_01003.7 | |
| IL_9SYR_210 | 1/S1/928:931, 1/S1/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_9SYR_211 | 1/S1/931:935, 1/S1/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9SYR_212 | 1/S1/942:945, 1/S1/981:984 | Tandem non-canonical cWW pairs | homologous IL_9H3G_201 IL_15225.5 | |
| IL_9SYR_213 | 1/S1/952:956, 1/S1/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9SYR_214 | 1/S1/1042:1047, 1/S1/1071:1073 | No text annotation | homologous IL_9PN5_189 IL_31690.2 | |
| IL_9SYR_215 | 1/S1/1047:1051, 1/S1/1067:1071 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_9SYR_216 | 1/S1/1091:1093, 1/S1/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9SYR_217 | 1/S1/1098:1101, 1/S1/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9H3G_206 IL_15225.5 | |
| IL_9SYR_218 | 1/S1/1101:1103, 1/S1/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_9SYR_219 | 1/S1/1108:1110, 1/S1/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_26092.1 | |
| IL_9SYR_220 | 1/S1/1168:1175, 1/S1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9SYR_221 | 1/S1/1203:1204, 1/S1/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9SYR_222 | 1/S1/1206:1208, 1/S1/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9SYR_223 | 1/S1/1213:1217, 1/S1/1681:1686 | No text annotation | ||
| IL_9SYR_224 | 1/S1/1230:1232, 1/S1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.7 | |
| IL_9SYR_225 | 1/S1/1235:1236, 1/S1/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9SYR_226 | 1/S1/1270:1272, 1/S1/1510:1512 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9SYR_227 | 1/S1/1281:1287, 1/S1/1314:1316 | No text annotation | ||
| IL_9SYR_228 | 1/S1/1281:1290, 1/S1/1309:1316 | No text annotation | ||
| IL_9SYR_229 | 1/S1/1287:1290, 1/S1/1309:1314 | No text annotation | ||
| IL_9SYR_230 | 1/S1/1291:1293, 1/S1/1306:1308 | No text annotation | homologous IL_9H3G_217 IL_75737.2 | |
| IL_9SYR_231 | 1/S1/1325:1327, 1/S1/1502:1503 | Single bulged U | homologous IL_9H3G_218 IL_97561.8 | |
| IL_9SYR_232 | 1/S1/1329:1335, 1/S1/1492:1500 | No text annotation | homologous IL_9H3G_220 NA | |
| IL_9SYR_233 | 1/S1/1337:1338, 1/S1/1488:1490 | Single bulged A | homologous IL_9H3G_222 IL_14190.5 | |
| IL_9SYR_234 | 1/S1/1347:1349, 1/S1/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9SYR_235 | 1/S1/1363:1365, 1/S1/1374:1375 | Minor groove platform | homologous IL_9H3G_224 IL_37129.1 | |
| IL_9SYR_236 | 1/S1/1395:1399, 1/S1/1447:1450 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_9SYR_237 | 1/S1/1402:1405, 1/S1/1441:1444 | No text annotation | homologous IL_9PN5_213 IL_78800.5 | |
| IL_9SYR_238 | 1/S1/1408:1409, 1/S1/1432:1438 | No text annotation | ||
| IL_9SYR_240 | 1/S1/1412:1413, 1/S1/1427:1429 | Single bulged G | geometric IL_8GLP_268 IL_28408.5 | |
| IL_9SYR_241 | 1/S1/1416:1417, 1/S1/1422:1424 | Single bulged C | geometric IL_8GLP_055 IL_05642.6 | |
| IL_9SYR_242 | 1/S1/1537:1539, 1/S1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_8GLP_270 IL_71625.6 | |
| IL_9SYR_243 | 1/S1/1541:1550, 1/S1/1582:1592 | No text annotation | ||
| IL_9SYR_244 | 1/S1/1550:1558, 1/S1/1577:1582 | No text annotation | ||
| IL_9SYR_245 | 1/S1/1560:1562, 1/S1/1573:1575 | No text annotation | homologous IL_9H3G_231 IL_81485.1 | |
| IL_9SYR_246 | 1/S1/1604:1610, 1/S1/1629:1635 | No text annotation | ||
| IL_9SYR_247 | 1/S1/1700:1702, 1/S1/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9SYR_248 | 1/S1/1702:1705, 1/S1/1829:1833 | No text annotation | homologous IL_9H3G_234 IL_25873.5 | |
| IL_9SYR_249 | 1/S1/1706:1708, 1/S1/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9H3G_235 IL_01003.7 | |
| IL_9SYR_250 | 1/S1/1708:1711, 1/S1/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9SYR_251 | 1/S1/1714:1716, 1/S1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9SYR_252 | 1/S1/1717:1720, 1/S1/1813:1816 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9SYR_253 | 1/S1/1720:1722, 1/S1/1812:1813 | Single bulged U | homologous IL_9H3G_239 IL_97561.8 | |
| IL_9SYR_254 | 1/S1/1729:1731, 1/S1/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9SYR_255 | 1/S1/1733:1736, 1/S1/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9SYR_256 | 1/S1/1739:1741, 1/S1/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.7 | |
| IL_9SYR_257 | 1/S1/1742:1746, 1/S1/1788:1792 | No text annotation | homologous IL_9H3G_243 IL_15190.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9SYR_025 | No text annotation | ||
| IL_9SYR_026 | Single bulged U | ||
| IL_9SYR_038 | No text annotation | ||
| IL_9SYR_065 | No text annotation | ||
| IL_9SYR_082 | Single bulged C | ||
| IL_9SYR_146 | Single bulged C | ||
| IL_9SYR_179 | Single bulged U | ||
| IL_9SYR_188 | Isolated non-canonical cWW pair | ||
| IL_9SYR_198 | Isolated non-canonical cWW pair | ||
| IL_9SYR_199 | Isolated non-canonical cWW pair | ||
| IL_9SYR_200 | No text annotation | ||
| IL_9SYR_201 | Single bulged C | ||
| IL_9SYR_202 | No text annotation | ||
| IL_9SYR_239 | Isolated cWH basepair | ||
| IL_9SYR_258 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9SYR_001 | 1/L1/112:116, 1/L1/155:160, 1/L1/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9SYR_002 | 1/L1/351:367, 1/L1/374:379, 1/L3/21:24 | No text annotation | homologous J3_9PN5_004 J3_07616.4 | |
| J3_9SYR_003 | 1/L1/380:387, 1/L1/414:415, 1/L3/19:20 | No text annotation | geometric J3_9PN5_005 J3_68715.4 | |
| J3_9SYR_004 | 1/L1/380:390, 1/L1/401:415, 1/L3/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_9SYR_005 | 1/L1/451:455, 1/L1/701:705, 1/L1/1292:1296 | No text annotation | homologous J3_8GLP_027 NA | |
| J3_9SYR_006 | 1/L1/1531:1537, 1/L1/1622:1624, 1/L1/1640:1643 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_9SYR_007 | 1/L1/1546:1548, 1/L1/1580:1584, 1/L1/1609:1612 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9SYR_008 | 1/L1/1726:1727, 1/L1/1802:1806, 1/L1/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9SYR_009 | 1/L1/2393:2399, 1/L1/2805:2807, 1/L1/2819:2822 | No text annotation | homologous J3_9AXU_013 J3_05025.4 | |
| J3_9SYR_010 | 1/L1/2402:2405, 1/L1/2785:2791, 1/L1/2800:2802 | No text annotation | homologous J3_8GLP_005 J3_76012.4 | |
| J3_9SYR_011 | 1/L1/2440:2445, 1/L1/2515:2519, 1/L1/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_9SYR_012 | 1/L1/2451:2456, 1/L1/2465:2476, 1/L1/2501:2508 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_9SYR_013 | 1/L1/2551:2555, 1/L1/2572:2575, 1/L1/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_9SYR_014 | 1/L1/2575:2576, 1/L1/2585:2589, 1/L1/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_9SYR_015 | 1/L1/2598:2602, 1/L1/2737:2738, 1/L1/2742:2747 | No text annotation | homologous J3_9AXU_018 J3_08594.4 | |
| J3_9SYR_016 | 1/L1/3937:3939, 1/L1/4074:4078, 1/L1/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9SYR_017 | 1/L1/4228:4230, 1/L1/4331:4342, 1/L1/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.4 | |
| J3_9SYR_018 | 1/L1/4241:4243, 1/L1/4267:4269, 1/L1/4278:4283 | No text annotation | homologous J3_9AXU_022 J3_05327.4 | |
| J3_9SYR_019 | 1/L1/4463:4466, 1/L1/4491:4493, 1/L1/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9SYR_020 | 1/L1/4751:4754, 1/L1/4879:4883, 1/L1/4936:4948 | No text annotation | homologous J3_8GLP_036 NA | |
| J3_9SYR_021 | 1/L2/9:14, 1/L2/65:66, 1/L2/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_9SYR_022 | 1/L3/44:45, 1/L3/58:64, 1/L3/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J3_9SYR_023 | 1/S1/40:41, 1/S1/481:489, 1/S1/511:514 | No text annotation | ||
| J3_9SYR_024 | 1/S1/223:238, 1/S1/280:288, 1/S1/295:298 | No text annotation | ||
| J3_9SYR_025 | 1/S1/682:685, 1/S1/917:922, 1/S1/1022:1023 | No text annotation | ||
| J3_9SYR_026 | 1/S1/682:685, 1/S1/917:923, 1/S1/1019:1023 | No text annotation | ||
| J3_9SYR_027 | 1/S1/816:819, 1/S1/829:831, 1/S1/843:848 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_9SYR_028 | 1/S1/938:941, 1/S1/985:993, 1/S1/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9SYR_029 | 1/S1/1094:1096, 1/S1/1136:1140, 1/S1/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_9SYR_030 | 1/S1/1218:1221, 1/S1/1645:1651, 1/S1/1673:1680 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_9SYR_031 | 1/S1/1225:1228, 1/S1/1530:1532, 1/S1/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.4 | |
| J3_9SYR_032 | 1/S1/1237:1244, 1/S1/1255:1266, 1/S1/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9SYR_033 | 1/S1/1272:1277, 1/S1/1320:1324, 1/S1/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9SYR_034 | 1/S1/1340:1345, 1/S1/1384:1389, 1/S1/1481:1486 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9SYR_035 | 1/S1/1350:1351, 1/S1/1360:1363, 1/S1/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9SYR_036 | 1/S1/1391:1395, 1/S1/1450:1456, 1/S1/1470:1479 | No text annotation | ||
| J3_9SYR_037 | 1/S1/1532:1536, 1/S1/1597:1604, 1/S1/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J4_9SYR_001 | 1/L1/111:112, 1/L1/278:283, 1/L1/304:310, 1/L1/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_9SYR_002 | 1/L1/196:199, 1/L1/215:222, 1/L1/226:228, 1/L1/240:244 | No text annotation | homologous J4_8GLP_002 NA | |
| J4_9SYR_003 | 1/L1/981:983, 1/L1/1070:1072, 1/L1/1240:1243, 1/L1/1268:1273 | No text annotation | homologous J4_8GLP_003 NA | |
| J4_9SYR_004 | 1/L1/2365:2371, 1/L1/2389:2391, 1/L1/2824:2829, 1/L1/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9SYR_005 | 1/L1/2406:2410, 1/L1/2434:2439, 1/L1/2538:2539, 1/L1/2777:2784 | No text annotation | homologous J4_8GLP_005 J4_77353.2 | |
| J4_9SYR_006 | 1/L1/2409:2410, 1/L1/2434:2439, 1/L1/2538:2539, 1/L1/2777:2783 | No text annotation | homologous J4_8GLP_006 J4_48150.2 | |
| J4_9SYR_007 | 1/L1/2451:2456, 1/L1/2465:2469, 1/L1/2471:2476, 1/L1/2501:2508 | No text annotation | homologous J4_8GLP_007 NA | |
| J4_9SYR_008 | 1/L1/2618:2619, 1/L1/2637:2642, 1/L1/2692:2698, 1/L1/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9SYR_009 | 1/L1/3634:3638, 1/L1/3650:3654, 1/L1/3690:3694, 1/L1/3821:3826 | No text annotation | homologous J4_9H3G_007 J4_78485.4 | |
| J4_9SYR_010 | 1/L1/3696:3698, 1/L1/3752:3753, 1/L1/3771:3780, 1/L1/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9SYR_011 | 1/L1/4231:4235, 1/L1/4289:4291, 1/L1/4318:4319, 1/L1/4328:4330 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_9SYR_012 | 1/L1/4587:4590, 1/L1/4620:4621, 1/L1/4676:4678, 1/L1/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9SYR_013 | 1/S1/98:106, 1/S1/355:357, 1/S1/405:409, 1/S1/431:432 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9SYR_014 | 1/S1/671:673, 1/S1/1032:1037, 1/S1/1078:1089, 1/S1/1160:1161 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J4_9SYR_015 | 1/S3/7:10, 1/S3/25:27, 1/S3/43:49, 1/S3/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_95067.3 | |
| J5_9SYR_001 | 1/L1/19:21, 1/L3/35:42, 1/L3/101:106, 1/L3/113:114, 1/L3/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.4 | |
| J5_9SYR_002 | 1/L1/1335:1340, 1/L1/1516:1519, 1/L1/1658:1661, 1/L1/2288:2290, 1/L1/2345:2351 | No text annotation | homologous J5_8GLP_002 J5_08384.4 | |
| J5_9SYR_003 | 1/L1/2855:2863, 1/L1/2887:2888, 1/L1/3613:3614, 1/L1/3618:3626, 1/L1/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_9SYR_004 | 1/L1/3903:3910, 1/L1/4392:4400, 1/L1/4444:4453, 1/L1/4528:4534, 1/L1/4552:4557 | No text annotation | ||
| J5_9SYR_005 | 1/L1/3920:3923, 1/L1/4188:4191, 1/L1/4204:4205, 1/L1/4227:4228, 1/L1/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.4 | |
| J5_9SYR_006 | 1/S1/30:34, 1/S1/521:527, 1/S1/558:563, 1/S1/592:595, 1/S1/641:644 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9SYR_007 | 1/S1/30:34, 1/S1/521:527, 1/S1/558:565, 1/S1/585:595, 1/S1/641:644 | No text annotation | ||
| J5_9SYR_008 | 1/S1/53:56, 1/S1/89:96, 1/S1/434:436, 1/S1/457:459, 1/S1/470:474 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J5_9SYR_009 | 1/S1/123:129, 1/S1/183:185, 1/S1/214:215, 1/S1/310:312, 1/S1/337:341 | No text annotation | ||
| J6_9SYR_001 | 1/L1/21:26, 1/L1/57:67, 1/L1/74:78, 1/L1/105:109, 1/L1/332:339, 1/L3/33:35 | No text annotation | ||
| J6_9SYR_002 | 1/L1/1352:1355, 1/L1/1384:1388, 1/L1/1395:1399, 1/L1/1418:1421, 1/L1/1464:1466, 1/L1/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9SYR_003 | 1/L1/3920:3923, 1/L1/4188:4191, 1/L1/4204:4205, 1/L1/4227:4230, 1/L1/4331:4342, 1/L1/4370:4381 | No text annotation | ||
| J7_9SYR_001 | 1/L1/1666:1671, 1/L1/1684:1685, 1/L1/1852:1855, 1/L1/1879:1884, 1/L1/1895:1899, 1/L1/2077:2078, 1/L1/2278:2283 | No text annotation |
Problematic loops
No problematic loops
Coloring options: