HL_9SYR_009

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9SYR|1|L1|G|315, 9SYR|1|L1|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_009 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.0974

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9SYR|1|L1|G|314
9SYR|1|L1|G|315
9SYR|1|L1|U|316
9SYR|1|L1|A|317
9SYR|1|L1|A|318
9SYR|1|L1|A|319
9SYR|1|L1|C|320
9SYR|1|L1|U|321
9SYR|1|L1|C|322
9SYR|1|L1|C|323

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L36a

Chain LH

60S ribosomal protein L15

Chain Lr

60S ribosomal protein L27a

Chain Lz

60S ribosomal protein L36