HL_9SYR_026

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_026 not in the Motif Atlas

Homologous match to HL_9AXU_027

Geometric discrepancy: 0.0984

The information below is about HL_9AXU_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9SYR|1|L1|C|2317
9SYR|1|L1|G|2318
9SYR|1|L1|C|2319
9SYR|1|L1|G|2320
9SYR|1|L1|G|2321
9SYR|1|L1|G|2322

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L28

Chain Lv

60S ribosomal protein L32