HL_9SYR_027

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_027 not in the Motif Atlas

Homologous match to HL_8GLP_033

Geometric discrepancy: 0.1128

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9SYR|1|L1|A|2376
9SYR|1|L1|C|2377
9SYR|1|L1|G|2378
9SYR|1|L1|A|2379
9SYR|1|L1|G|2380
9SYR|1|L1|A|2381
9SYR|1|L1|A|2382
9SYR|1|L1|C|2383
9SYR|1|L1|U|2384

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L17

Chain Li

60S ribosomal protein L19

Chain Lu

60S ribosomal protein L31

Chain Na

Nascent polypeptide-associated complex subunit alpha

Chain Nb

Isoform 2 of Transcription factor BTF3