HL_9SYR_034

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9SYR|1|L1|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_034 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.1688

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9SYR|1|L1|G|2624
9SYR|1|L1|U|2625
9SYR|1|L1|U|2626
9SYR|1|L1|C|2627
9SYR|1|L1|U|2628
9SYR|1|L1|C|2629
9SYR|1|L1|U|2630
9SYR|1|L1|U|2631
9SYR|1|L1|PSU|2632

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L22

Chain Nb

Isoform 2 of Transcription factor BTF3