HL_9SYR_045

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9SYR|1|L1|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_045 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0815

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9SYR|1|L1|U|3796
9SYR|1|L1|C|3797
9SYR|1|L1|U|3798
9SYR|1|L1|A|3799
9SYR|1|L1|A|3800
9SYR|1|L1|U|3801
9SYR|1|L1|U|3802
9SYR|1|L1|A|3803
9SYR|1|L1|G|3804

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lm

60S ribosomal protein L23

Chain S1

Small subunit ribosomal RNA; SSU rRNA