HL_9SYR_048

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9SYR|1|L1|A|4214, 9SYR|1|L1|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_048 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.08

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9SYR|1|L1|U|4210
9SYR|1|L1|C|4211
9SYR|1|L1|A|4212
9SYR|1|L1|A|4213
9SYR|1|L1|A|4214
9SYR|1|L1|C|4215
9SYR|1|L1|G|4216
9SYR|1|L1|G|4217
9SYR|1|L1|U|4218
9SYR|1|L1|A|4219
9SYR|1|L1|6MZ|4220
9SYR|1|L1|C|4221
9SYR|1|L1|G|4222

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L10

Chain Lk

60S ribosomal protein L21

Chain Ls

60S ribosomal protein L29