HL_9SYR_059

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_059 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.0883

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SYR|1|L1|U|4646
9SYR|1|L1|G|4647
9SYR|1|L1|A|4648
9SYR|1|L1|G|4649
9SYR|1|L1|G|4650
9SYR|1|L1|A|4651

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L22

Chain Lu

60S ribosomal protein L31

Chain Nb

Isoform 2 of Transcription factor BTF3