HL_9SYR_088

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_088 not in the Motif Atlas

Geometric match to HL_8GLP_105

Geometric discrepancy: 0.3711

The information below is about HL_8GLP_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SYR|1|S1|U|1114
9SYR|1|S1|U|1115
9SYR|1|S1|C|1116
9SYR|1|S1|C|1117
9SYR|1|S1|C|1118
9SYR|1|S1|A|1119

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sk

40S ribosomal protein S27

Chain Su

40S ribosomal protein S3a